Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0301
         (616 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    24   3.4  
AJ237706-1|CAB40347.1|  570|Anopheles gambiae putative 5'-nucleo...    24   4.5  
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            23   7.8  

>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 139 HSKRETRRRSPFGSRRSMLSVCFLTRASRLRRSGYNXVRC 20
           HS+R  RRRS     R   SVC+    S + +      RC
Sbjct: 72  HSQR--RRRSSSPRTRQFRSVCYYVSESEMEKIEMLFARC 109


>AJ237706-1|CAB40347.1|  570|Anopheles gambiae putative
           5'-nucleotidase protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 298 RPSGRWCEATIHGIILNA 245
           R S RWCE T+  +I +A
Sbjct: 363 RESCRWCECTLGDLIADA 380


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 193 EPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSM 86
           + R   GSK     S  + S+ E  RR+P    RSM
Sbjct: 106 DARPRFGSKAAAANSSATSSESEDERRTPPQDMRSM 141


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,232
Number of Sequences: 2352
Number of extensions: 12301
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60132501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)