Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0301
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   4.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   9.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   9.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   9.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   9.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   9.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   9.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   9.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   9.6  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 277 RTTGRSAECMNQMSETAVPLVLSS 348
           +  G+  +C N MSE  V ++L +
Sbjct: 170 KENGKEFDCHNYMSELTVDILLET 193


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 461 LLRNDRKSRHRRIKKQVAMNAWLPQA 538
           +++ +R+  H R+KK++ +   L +A
Sbjct: 43  MIQQEREREHERLKKKMILEYELRRA 68


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 461 LLRNDRKSRHRRIKKQVAMNAWLPQA 538
           +++ +R+  H R+KK++ +   L +A
Sbjct: 43  MIQQEREREHERLKKKMILEYELRRA 68


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 461 LLRNDRKSRHRRIKKQVAMNAWLPQA 538
           +++ +R+  H R+KK++ +   L +A
Sbjct: 43  MIQQEREREHERLKKKMILEYELRRA 68


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 461 LLRNDRKSRHRRIKKQVAMNAWLPQA 538
           +++ +R+  H R+KK++ +   L +A
Sbjct: 43  MIQQEREREHERLKKKMILEYELRRA 68


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 461 LLRNDRKSRHRRIKKQVAMNAWLPQA 538
           +++ +R+  H R+KK++ +   L +A
Sbjct: 43  MIQQEREREHERLKKKMILEYELRRA 68


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 461 LLRNDRKSRHRRIKKQVAMNAWLPQA 538
           +++ +R+  H R+KK++ +   L +A
Sbjct: 43  MIQQEREREHERLKKKMILEYELRRA 68


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 461 LLRNDRKSRHRRIKKQVAMNAWLPQA 538
           +++ +R+  H R+KK++ +   L +A
Sbjct: 43  MIQQEREREHERLKKKMILEYELRRA 68


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 461 LLRNDRKSRHRRIKKQVAMNAWLPQA 538
           +++ +R+  H R+KK++ +   L +A
Sbjct: 43  MIQQEREREHERLKKKMILEYELRRA 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,768
Number of Sequences: 438
Number of extensions: 3362
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)