Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0300
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0788 + 20553587-20553726,20554131-20554196,20554695-205549...    29   1.5  
03_05_0183 - 21681673-21682524                                         29   2.0  
02_04_0220 - 21014225-21014386,21014492-21014572,21014739-210149...    27   6.2  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    27   8.2  
02_04_0453 + 23053621-23054167,23054867-23054958,23055085-230551...    27   8.2  

>10_08_0788 +
           20553587-20553726,20554131-20554196,20554695-20554926,
           20555033-20555237,20555335-20555441
          Length = 249

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -2

Query: 355 DRNLAWSKRAKAGLIQMFSTHRDCESTAYR----SFSIRVFSKRCQKSYHRDNWLVAAK 191
           +R L W +   A +++ FSTH       Y     S    +F   C KSYH  N+++ +K
Sbjct: 125 ERGLEWMR---AEVVEAFSTHSGANVVEYELEDISHQCLIFDD-CAKSYHHYNFIMKSK 179


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 197 SQAFIATLLFDPSMSALPIIAKQNSPS 117
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>02_04_0220 -
           21014225-21014386,21014492-21014572,21014739-21014938,
           21014999-21015157,21015248-21015377,21015520-21015673,
           21015785-21015867,21015981-21016040,21016131-21016217
          Length = 371

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 440 RGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKPRVEQKGKSWL 315
           +GH     +T A    KNNAG L+  Q  Q+    Q GK  L
Sbjct: 212 KGHLWRSQITAAKEDKKNNAGALQLLQL-QEEACRQSGKDGL 252


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 404 PPQSNSPPGSVLXPDHAGVLNGDE 475
           P  +NS P +V  PD   +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762


>02_04_0453 +
           23053621-23054167,23054867-23054958,23055085-23055149,
           23058558-23059086
          Length = 410

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 170 KATSL*TLGCHKPVIPVVTFLAPLAKNSYTKGSIGRAFAVP 292
           KATS  +L C K  I +  F  PL+ +S+   S+G    +P
Sbjct: 88  KATSPSSLDCPKLGILIEPFFIPLSSSSWIWSSLGSWLLLP 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,485,533
Number of Sequences: 37544
Number of extensions: 275409
Number of successful extensions: 769
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)