Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0300
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81048-9|CAI79126.1|  560|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocar...    27   7.4  
U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of p...    27   9.8  
U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of p...    27   9.8  

>Z81048-9|CAI79126.1|  560|Caenorhabditis elegans Hypothetical
           protein C41G7.5b protein.
          Length = 560

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = +2

Query: 284 AVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLXPD 448
           ++P+ T H D   F P     V      A  H  Y LT  PP    PPG+V  PD
Sbjct: 434 SIPIPT-HFDMQMFDPSWNHGVH---PPAWPHDVYHLTQYPPTYPHPPGTVGYPD 484


>Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical
           protein C41G7.5a protein.
          Length = 602

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = +2

Query: 284 AVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLXPD 448
           ++P+ T H D   F P     V      A  H  Y LT  PP    PPG+V  PD
Sbjct: 476 SIPIPT-HFDMQMFDPSWNHGVH---PPAWPHDVYHLTQYPPTYPHPPGTVGYPD 526


>AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocarbon
           receptor orthologAHR-1 protein.
          Length = 602

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = +2

Query: 284 AVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLXPD 448
           ++P+ T H D   F P     V      A  H  Y LT  PP    PPG+V  PD
Sbjct: 476 SIPIPT-HFDMQMFDPSWNHGVH---PPAWPHDVYHLTQYPPTYPHPPGTVGYPD 526


>U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform b protein.
          Length = 623

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 230 LAPLAKNSYTKGSIGRAFAVPMRTEHLDQASFCPF 334
           L PLAK  Y K ++   F   M  E   + + CPF
Sbjct: 502 LHPLAKAQYGKNNMKEYFLNEMEVEKSRECTDCPF 536


>U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform a protein.
          Length = 684

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 230 LAPLAKNSYTKGSIGRAFAVPMRTEHLDQASFCPF 334
           L PLAK  Y K ++   F   M  E   + + CPF
Sbjct: 563 LHPLAKAQYGKNNMKEYFLNEMEVEKSRECTDCPF 597


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,960,690
Number of Sequences: 27780
Number of extensions: 217850
Number of successful extensions: 511
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)