Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0300
         (491 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.42 
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    30   0.74 
At3g03590.1 68416.m00362 SWIB complex BAF60b domain-containing p...    28   3.0  
At5g66980.1 68418.m08444 transcriptional factor B3 family protei...    28   3.9  
At4g39070.1 68417.m05533 zinc finger (B-box type) family protein...    27   6.9  
At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine...    27   6.9  
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138...    27   6.9  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 209 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 102
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 364 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIR 251
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  +R
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At3g03590.1 68416.m00362 SWIB complex BAF60b domain-containing
           protein contains Pfam profile PF02201: BAF60b domain of
           the SWIB complex
          Length = 143

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 291 GTAKARPIDPLV*EFLARGARKVTTGITGLW 199
           G  K  P+ P++ +FL  G    T  I G+W
Sbjct: 63  GIFKVTPVSPVLAQFLGTGETSRTDAIKGIW 93


>At5g66980.1 68418.m08444 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 334

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +2

Query: 194 GCHKPVIP---VVTFLAPLAKNSYTKGSIGRAFAVPMRTEHLDQASFCPF 334
           G H+ VIP   +     PL K ++    IGR + V  +TE  ++  FC F
Sbjct: 19  GSHELVIPPAFIDMLEKPLPKEAFLVDEIGRLWCVETKTEDTEE-RFCVF 67


>At4g39070.1 68417.m05533 zinc finger (B-box type) family protein
           salt-tolerance protein - Arabidopsis thaliana,
           PID:e224078
          Length = 242

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 311 DQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSP 424
           D+A+ C    R V    +LA  HLR+SLT  P   ++P
Sbjct: 20  DEAALCNGCDRHVHFANKLAGKHLRFSLTS-PTFKDAP 56


>At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine
           aminohydrolase, putative identical to cytidine deaminase
           homolog DesA [Arabidopsis thaliana] GI:4836443, cytidine
           deaminase 8 (CDA8) [Arabidopsis thaliana] GI:5080714;
           similar to cytidine deaminase (CDD) [Arabidopsis
           thaliana] GI:3046700; contains Pfam profile PF00383:
           Cytidine and deoxycytidylate deaminase zinc-binding
          Length = 293

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 284 AVPMR--TEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVP 406
           A PMR    H++  S+  F P+ +S L   A+ H R  ++  P
Sbjct: 2   AQPMRFMLNHIETESYGAFTPQNLSPLINRAIPHTRAQISGSP 44


>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 568

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 151 ADIEGSKSNVAMNAWLPQ 204
           AD+ GS  NV M AW P+
Sbjct: 122 ADVNGSSHNVLMEAWKPR 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,516,293
Number of Sequences: 28952
Number of extensions: 208283
Number of successful extensions: 556
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)