Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0298
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    70   1e-13
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    27   0.82 
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    25   3.3  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    24   7.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   7.7  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 70.1 bits (164), Expect = 1e-13
 Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
 Frame = +2

Query: 74  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 253
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 254 ATIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRSKV-QAPARPGAIAP 400
             +          R  +         L+ V     + V  APARP AIAP
Sbjct: 68  NDMPELERLLPVVRGNVGFVF-TNADLKEVRETIIANVIAAPARPNAIAP 116


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 312 HEANVALDVWQQFLEGWIVARWSLMALRIIVFFPMSTILEPR 187
           HE  V  D  +Q    W    W LM + +++F  +  ILEPR
Sbjct: 151 HEEQVWSDKIRQ-ASTW--GTWGLMGINVVLFVVVQLILEPR 189


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -3

Query: 276 FLEGWIVAR--WSLMALRIIVFFPM 208
           F  GWI+    W+L+A   I F+P+
Sbjct: 587 FFRGWIIVIIIWTLIAALYITFYPL 611


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 123 FGYSSKSWMILTK*LDFQVALSSLP 49
           F Y++K+W ++ K L  QV    +P
Sbjct: 317 FAYATKTWHLIEKNLPTQVGFLPIP 341


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 115  LVQELDDLNEVVRLPSSLVLPTHPG 41
            L QE+  L   +RLP+ L  P++ G
Sbjct: 931  LTQEITQLGSNMRLPTKLTRPSNDG 955


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,803,922
Number of Sequences: 5004
Number of extensions: 34543
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)