Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0298
(401 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 79 1e-15
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 79 1e-15
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 79 1e-15
11_01_0033 - 251730-251855,252068-252144,252228-252318,252644-25... 33 0.085
12_01_0032 - 266954-267079,267204-267245,267290-267366,267450-26... 32 0.15
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 30 0.60
11_01_0355 + 2679561-2680985,2681183-2682295 29 1.4
10_08_0406 - 17688069-17690643,17691065-17691132 28 3.2
04_04_1404 + 33302080-33303341,33303435-33305307 28 3.2
02_05_0833 + 32080845-32081118,32081483-32081663,32081825-320819... 28 3.2
02_01_0620 + 4650572-4650671,4650755-4650891,4651012-4651205,465... 28 3.2
12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381... 27 4.2
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 4.2
09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006 27 4.2
07_03_0425 - 18070607-18070712,18071771-18072744 27 4.2
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 4.2
03_06_0515 + 34457933-34458343,34458822-34459000,34459491-344598... 27 4.2
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255 27 7.3
02_03_0134 - 15596379-15597689 27 7.3
05_03_0331 + 12488005-12488454,12488561-12489505 26 9.7
05_02_0075 - 6359897-6360292,6360463-6360465 26 9.7
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 79.4 bits (187), Expect = 1e-15
Identities = 52/119 (43%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Frame = +2
Query: 53 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 232
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 233 KAIKDHLATIQPSRNCCHTSRATLASCSPAET--SLRSV-TNCWRSKVQAPARPGAIAP 400
+ IK H A +++ + + T L+ V + KV APAR G +AP
Sbjct: 64 RCIKVH-ADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAP 121
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +1
Query: 238 HQRPPGDNPALEKLLPHIKGNVGFVFTRGDLVEVRDKL 351
H G+ LE L+P + GNVG +FT+GDL EVR+++
Sbjct: 69 HADNTGNKDFLE-LMPLLVGNVGLIFTKGDLKEVREEV 105
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 79.4 bits (187), Expect = 1e-15
Identities = 52/119 (43%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Frame = +2
Query: 53 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 232
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 233 KAIKDHLATIQPSRNCCHTSRATLASCSPAET--SLRSV-TNCWRSKVQAPARPGAIAP 400
+ IK H A +++ + + T L+ V + KV APAR G +AP
Sbjct: 64 RCIKVH-ADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAP 121
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +1
Query: 238 HQRPPGDNPALEKLLPHIKGNVGFVFTRGDLVEVRDKL 351
H G+ LE L+P + GNVG +FT+GDL EVR+++
Sbjct: 69 HADNTGNKDFLE-LMPLLVGNVGLIFTKGDLKEVREEV 105
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 79.0 bits (186), Expect = 1e-15
Identities = 52/119 (43%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Frame = +2
Query: 53 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 232
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 233 KAIKDHLATIQPSRNCCHTSRATLASCSPAET--SLRSV-TNCWRSKVQAPARPGAIAP 400
+ IK H A ++ + + T L+ V + KV APAR G +AP
Sbjct: 64 RCIKVH-ADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAP 121
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +1
Query: 238 HQRPPGDNPALEKLLPHIKGNVGFVFTRGDLVEVRDKL 351
H G+ LE L+P + GNVG +FT+GDL EVR+++
Sbjct: 69 HADNTGNKEFLE-LMPLLVGNVGLIFTKGDLKEVREEV 105
>11_01_0033 -
251730-251855,252068-252144,252228-252318,252644-252704,
252800-252858,252955-253045,253238-253406,253760-253787
Length = 233
Score = 33.1 bits (72), Expect = 0.085
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 11 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 190
K R+ TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+
Sbjct: 3 KSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLK 62
Query: 191 GSS-IVLMGKNTM 226
SS I L GK M
Sbjct: 63 SSSRIFLAGKKVM 75
>12_01_0032 -
266954-267079,267204-267245,267290-267366,267450-267540,
267864-267924,268021-268079,268176-268266,268481-268698,
268818-268824,269013-269148,270064-270307
Length = 383
Score = 32.3 bits (70), Expect = 0.15
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 23 SPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS- 199
S TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+ SS
Sbjct: 143 SSAVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLKSSSR 202
Query: 200 IVLMGKNTM 226
I L GK M
Sbjct: 203 IFLAGKKVM 211
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 30.3 bits (65), Expect = 0.60
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 299 TLASCSPAETSLRSVTNCWRSKVQAPARPGAIAP 400
T+ SC S R V + +S + AP RPG++ P
Sbjct: 214 TILSCVQKAVSDRKVLSLLKSALNAPVRPGSVPP 247
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 284 HTSRATLASCSPAETSLRSVTNCWRSKVQAPARP 385
HTS TL+ SP+ +S+ T+C+ + ++P
Sbjct: 491 HTSELTLSFSSPSPSSISGYTSCYNNNNMMSSKP 524
>10_08_0406 - 17688069-17690643,17691065-17691132
Length = 880
Score = 27.9 bits (59), Expect = 3.2
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 94 DHPTLGRVPKMFHRGCR*RGLATDAA-DPYLATWLQYRAHGKKHNDAQSHQR 246
D P R ++FHR R RG A D A D W+ + ND Q H +
Sbjct: 789 DDPAARRGARLFHR-LRRRGPAFDKAWDELARFWVHLVVYLAPSNDVQGHAK 839
>04_04_1404 + 33302080-33303341,33303435-33305307
Length = 1044
Score = 27.9 bits (59), Expect = 3.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 240 SKTTWRQSSPRETVATHQGQRW 305
++ W + P + + THQG RW
Sbjct: 233 ARCAWEYTGPEDYMRTHQGARW 254
>02_05_0833 +
32080845-32081118,32081483-32081663,32081825-32081999,
32082088-32082220,32082303-32082373,32082738-32082821,
32083106-32083196,32083315-32083835,32083932-32084096,
32084181-32084399,32084859-32084986,32085104-32085293,
32085478-32085561,32085643-32085740,32086127-32086391,
32086511-32086673,32086792-32086972,32087299-32087370,
32087473-32087614
Length = 1078
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -1
Query: 281 NSFSRAGLSPGGL*WLCASLCFFP*ARYWSHVA 183
+S SRAGL PGG L A+ RYW H A
Sbjct: 39 SSHSRAGL-PGGARLLAAAAPLHCAGRYWPHAA 70
>02_01_0620 +
4650572-4650671,4650755-4650891,4651012-4651205,
4651287-4651571,4652111-4652169,4652469-4652540,
4652817-4652925,4653239-4653980
Length = 565
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +2
Query: 311 CSPAETSLRSVTNCWRSKVQAPARPGAIAP 400
C P E L + WR +V R A AP
Sbjct: 409 CDPGEVDLAAAPRAWRERVCRTTRAAAAAP 438
>12_01_1073 +
11135853-11137388,11137627-11137846,11137990-11138178,
11138257-11138457,11138547-11139246,11163479-11164106
Length = 1157
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +2
Query: 245 DHLATIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRSKV 367
D ++ + S N CH + ++CS + N WR +
Sbjct: 650 DWVSKVNSSSNFCHACNSNKSNCSERHCRRLKLENIWRRAI 690
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 116 YPKCFI--VGADNVGSQQMQQIRISLRGSSIV 205
Y KC I VG DN+ Q MQQ R SL I+
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSLETLEIL 1323
>09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006
Length = 585
Score = 27.5 bits (58), Expect = 4.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 240 SKTTWRQSSPRETVATHQGQRW 305
S+ W + P + + TH G+RW
Sbjct: 126 SRGAWEYTGPNDPMRTHVGERW 147
>07_03_0425 - 18070607-18070712,18071771-18072744
Length = 359
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 139 CR*RGLATDAADPYLATWLQYRAHGKKHNDAQSHQRPPGDNPALEKLLPHIK 294
CR G DP L T + AH +K + + PAL + PH++
Sbjct: 203 CRGGGGGDSQNDPMLQTVNEVTAHSRKARALVLNTSASMEGPALAHIAPHMR 254
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 74 KSNYFVKIIQLLDEYPKCF 130
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>03_06_0515 +
34457933-34458343,34458822-34459000,34459491-34459812,
34459945-34460025
Length = 330
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 234 KPSKTTWRQSSPRETVATHQGQRWL 308
KP K TWR++ + +A H Q WL
Sbjct: 84 KPPKRTWRENLNLDFLAEHGPQWWL 108
>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
Length = 965
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 289 CVATVSRGLDCRQVVFDGFAHH 224
CVA R R +V DGF HH
Sbjct: 668 CVADAIRANPLRVIVLDGFDHH 689
>02_03_0134 - 15596379-15597689
Length = 436
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 129 SSWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*CAKPSKTTWRQSSPRE 275
S W P ARNR S+ ++R A S + +K+ ++P SS ++
Sbjct: 114 SVWPPALTARNRSSKDMNR-TAKSSSAMQKSNLSSRPGVDKMAASSAKQ 161
>05_03_0331 + 12488005-12488454,12488561-12489505
Length = 464
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 351 QFVTDLNEVSAGEHEANVALDVWQQFLEGWIVARW 247
QF+T L E + G H A VW++ + + ARW
Sbjct: 177 QFLTALTEFARGVHGAPTVRPVWEREV---LTARW 208
>05_02_0075 - 6359897-6360292,6360463-6360465
Length = 132
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 196 QYRAHGKKHNDAQSHQRPPGDNPA 267
Q + HG HN + HQ PP PA
Sbjct: 32 QVKPHGMGHNCHKHHQGPPVSVPA 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,673,518
Number of Sequences: 37544
Number of extensions: 261234
Number of successful extensions: 726
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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