Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0298
         (401 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)         87   7e-18
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   2.5  
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)               28   3.3  
SB_53781| Best HMM Match : Keratin_B2 (HMM E-Value=0.16)               27   4.3  
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)                27   4.3  
SB_17030| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5)                      27   5.7  
SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_14578| Best HMM Match : Gal_Lectin (HMM E-Value=0.72)               27   7.6  
SB_8974| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)                      26   10.0 

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score = 86.6 bits (205), Expect = 7e-18
 Identities = 48/100 (48%), Positives = 56/100 (56%)
 Frame = +2

Query: 101 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLATIQPSRNC 280
           Q LDEYPK F+VG DNVGS+QMQ IR SLRG   VLMGKNTM+RKAI+ HL         
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60

Query: 281 CHTSRATLASCSPAETSLRSVTNCWRSKVQAPARPGAIAP 400
               +  +      E           +KV APA+ G IAP
Sbjct: 61  LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAP 100


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 115  VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKK 219
            VPKMFH     RG+ T+A  P + T +L+ R  G++
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRR 3891


>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
          Length = 430

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/70 (22%), Positives = 35/70 (50%)
 Frame = +2

Query: 101 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLATIQPSRNC 280
           ++L    +C    +  V S  +QQ  +S+R +       + ++   ++  + +I+P+R C
Sbjct: 204 KVLSRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCC 263

Query: 281 CHTSRATLAS 310
            HTS   L++
Sbjct: 264 QHTSSKVLST 273



 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +2

Query: 122 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLATIQPSRNCCHTSRAT 301
           +C    +  V S  +QQ  +S+R +       + ++   ++  + +I+P+R C HTS   
Sbjct: 51  RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSTYVQQGVVSIRPARCCQHTSSKV 110

Query: 302 LAS 310
           L++
Sbjct: 111 LST 113



 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +2

Query: 122 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLATIQPSRNCCHTSRAT 301
           +C    +  V S  +QQ  +S+R +       + ++   ++  + +I+P+R C HTS   
Sbjct: 236 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSTYVQSGVVSIRPARCCQHTSSKV 295

Query: 302 LAS 310
           L++
Sbjct: 296 LSA 298



 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +2

Query: 122 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLATIQPSRNCCHTSRAT 301
           +C    +  V S  +QQ  +S+R +       + ++   ++  + +I+P+R C HTS   
Sbjct: 320 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKV 379

Query: 302 LAS 310
           L++
Sbjct: 380 LSA 382



 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +2

Query: 122 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLATIQPSRNCCHTSRAT 301
           +C    +  V S  +QQ  +S+R +       + ++   ++  + +I+P+R C HTS   
Sbjct: 345 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKV 404

Query: 302 LAS 310
           L++
Sbjct: 405 LSA 407



 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = +2

Query: 140 ADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLATIQPSRNCCHTSRATLAS 310
           +  V S  +QQ  +S+R +       + ++   ++  + +I+P+R C HTS   L++
Sbjct: 301 SSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSA 357


>SB_53781| Best HMM Match : Keratin_B2 (HMM E-Value=0.16)
          Length = 561

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 19/73 (26%), Positives = 27/73 (36%)
 Frame = +2

Query: 122 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLATIQPSRNCCHTSRAT 301
           +C  V A        + +   LR  S  +MG  T M K + D  A      NCC  +   
Sbjct: 465 RCMTVKAIGKNPSNGEPMSFELRNCSSSMMGMCTNMCKMMNDTGALTSCEVNCCEGNGCN 524

Query: 302 LASCSPAETSLRS 340
            A       ++RS
Sbjct: 525 NAGLPTTMPTVRS 537


>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
          Length = 883

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
 Frame = +2

Query: 56  EDKATWKSNYFVKIIQLLD-EYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 232
           E K+ +K    V    +L+ E P+    G   +  +     R S R   + L  + + +R
Sbjct: 669 EKKSDFKDKEQVPADPVLEQERPRMISSGVRRLNGKLTAAKRRSRRRKHVDLEAEVSGLR 728

Query: 233 KAIK---DHLATIQPSRNCCHTSRATLASCSPAETSLRSVTN 349
           + ++   D  A  + +RN   TSRA +++C    T  +S +N
Sbjct: 729 QEVEENADESAFGKTTRNVRLTSRACISNCKTVATCRQSASN 770


>SB_17030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 25/81 (30%), Positives = 37/81 (45%)
 Frame = +2

Query: 2   VVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRI 181
           VV  F  +P+ T       D A+W   Y+V I  L    P   IV    V + ++++ RI
Sbjct: 168 VVTTFRPAPHVTYCTEFWRD-ASWGVLYWVAIFILQYLVPLIIIVSQAAVIAVKLRKSRI 226

Query: 182 SLRGSSIVLMGKNTMMRKAIK 244
            +  SS   + K T +R  IK
Sbjct: 227 PMLSSSSETLYKKT-LRTRIK 246


>SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5)
          Length = 152

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 170 QIRISLRGSSIVLMGKNTMMRKAIKDHLA 256
           Q+R  L   S +L+G NT+++ A+ D LA
Sbjct: 23  QVRPGLTALSTILLGANTVIQAALPDILA 51


>SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 18/71 (25%), Positives = 27/71 (38%)
 Frame = +2

Query: 143 DNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLATIQPSRNCCHTSRATLASCSPA 322
           D +G QQ +  ++ L      L+G   + R+  +    T   SR C    +    SCS  
Sbjct: 1   DGIGQQQPKLYKLVLPNFGFQLIGYPGIYRQTGRGEEVTWHGSRTCTLHRKLAGVSCSCC 60

Query: 323 ETSLRSVTNCW 355
             SL      W
Sbjct: 61  GNSLLHTHFTW 71


>SB_14578| Best HMM Match : Gal_Lectin (HMM E-Value=0.72)
          Length = 502

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 257 TIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRSKVQAPARPG 388
           T+QPS     T+  TL    P ET   + ++  +S+V A    G
Sbjct: 217 TVQPSTTSSETTTTTLKEVKPVETPGSTSSSTSQSEVSASIGTG 260


>SB_8974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +2

Query: 191 GSSIVLMGKNTMMRKAIKDHLATIQPSRNCCHTSRATLASCSPAETSLR-SVTNCWRSKV 367
           G S   + K    R  + DH   I P  + C   R + AS SP+    R +VT  WR  V
Sbjct: 82  GGSGTQVAKYLHKRLVVGDHDEVITPFGDVCPRLRVS-ASASPSIVPRRGAVTRIWRFFV 140

Query: 368 QAPAR 382
              +R
Sbjct: 141 PLGSR 145


>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 20/75 (26%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
 Frame = +2

Query: 158 QQMQQIRISLRGSSIVLM-GKNT-MMRKAIKDHL-ATIQPSRNCCHTSRATLASCSPAET 328
           +  ++  + LR  +++L+ G +T ++   +K +L AT+  + NC   +RAT+A+ S    
Sbjct: 326 KNQERKNLVLRSPNLLLLRGFSTFIVFLMVKRNLSATVATNTNCYSATRATVATNSNFYN 385

Query: 329 SLRSV----TNCWRS 361
           ++R+     TNC+ +
Sbjct: 386 AMRATVAHNTNCYNA 400


>SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 202 RAHGKKHNDAQSHQRPPGDN 261
           R HGKK     S +RP G+N
Sbjct: 89  RHHGKKEKQRHSEKRPKGNN 108


>SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2504

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 377  LELGLCFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAG 261
            L+ G CF+ + +  +        KP   L CG  F++AG
Sbjct: 2416 LQCGKCFTQAGNLKTHALTHTGEKPHQCLQCGKCFAQAG 2454


>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
          Length = 939

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 353 NSLSRTSTRSPRVNTKPTLPLMCGNSFSRAG-LSP 252
           NS +    R PR  TKP L     NS S++G LSP
Sbjct: 53  NSPTTVEERQPRDETKPLLYQHRNNSASKSGELSP 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,046,992
Number of Sequences: 59808
Number of extensions: 290634
Number of successful extensions: 882
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)