Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0298
         (401 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair pro...   128   3e-30
BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p pro...   128   3e-30
AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p pro...   128   3e-30
AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA...   128   3e-30
AY118591-1|AAM49960.1| 1145|Drosophila melanogaster LD45339p pro...    33   0.11 
AE014297-1957|AAF55143.1| 1145|Drosophila melanogaster CG6623-PA...    33   0.11 
AY061517-1|AAL29065.1|  256|Drosophila melanogaster LD47064p pro...    33   0.14 
AE013599-1019|AAF58844.1|  256|Drosophila melanogaster CG1381-PA...    33   0.14 

>M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair
           protein protein.
          Length = 317

 Score =  128 bits (309), Expect = 3e-30
 Identities = 63/118 (53%), Positives = 77/118 (65%)
 Frame = +2

Query: 47  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 226
           M RE+KA WK+ YF+K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG ++VLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query: 227 MRKAIKDHLATIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRSKVQAPARPGAIAP 400
           MRKAI+ HL             +  +                  SKV+APARPGAIAP
Sbjct: 61  MRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAP 118


>BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p
           protein.
          Length = 317

 Score =  128 bits (309), Expect = 3e-30
 Identities = 63/118 (53%), Positives = 77/118 (65%)
 Frame = +2

Query: 47  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 226
           M RE+KA WK+ YF+K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG ++VLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query: 227 MRKAIKDHLATIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRSKVQAPARPGAIAP 400
           MRKAI+ HL             +  +                  SKV+APARPGAIAP
Sbjct: 61  MRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAP 118


>AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p
           protein.
          Length = 317

 Score =  128 bits (309), Expect = 3e-30
 Identities = 63/118 (53%), Positives = 77/118 (65%)
 Frame = +2

Query: 47  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 226
           M RE+KA WK+ YF+K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG ++VLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query: 227 MRKAIKDHLATIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRSKVQAPARPGAIAP 400
           MRKAI+ HL             +  +                  SKV+APARPGAIAP
Sbjct: 61  MRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAP 118


>AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA
           protein.
          Length = 317

 Score =  128 bits (309), Expect = 3e-30
 Identities = 63/118 (53%), Positives = 77/118 (65%)
 Frame = +2

Query: 47  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 226
           M RE+KA WK+ YF+K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG ++VLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query: 227 MRKAIKDHLATIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRSKVQAPARPGAIAP 400
           MRKAI+ HL             +  +                  SKV+APARPGAIAP
Sbjct: 61  MRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAP 118


>AY118591-1|AAM49960.1| 1145|Drosophila melanogaster LD45339p
           protein.
          Length = 1145

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
 Frame = -3

Query: 396 AMAPGRAGAWTLL----LQQFVTDLNEVSAGEHEANVALDVWQQFLEGWIVARWSLMALR 229
           A+   + G W++L    L  FVT+ N+V   +     A+D+W + L  + V+ W ++ + 
Sbjct: 58  ALEKYKQGDWSILEHPILHIFVTECNDVDTYKATIREAIDIWLKTLTSYGVSDWMILLVE 117

Query: 228 II------VFFPMSTILE 193
            +       F P +T+L+
Sbjct: 118 TLDMRKTKNFMPRTTVLD 135


>AE014297-1957|AAF55143.1| 1145|Drosophila melanogaster CG6623-PA
           protein.
          Length = 1145

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
 Frame = -3

Query: 396 AMAPGRAGAWTLL----LQQFVTDLNEVSAGEHEANVALDVWQQFLEGWIVARWSLMALR 229
           A+   + G W++L    L  FVT+ N+V   +     A+D+W + L  + V+ W ++ + 
Sbjct: 58  ALEKYKQGDWSILEHPILHIFVTECNDVDTYKATIREAIDIWLKTLTSYGVSDWMILLVE 117

Query: 228 II------VFFPMSTILE 193
            +       F P +T+L+
Sbjct: 118 TLDMRKTKNFMPRTTVLD 135


>AY061517-1|AAL29065.1|  256|Drosophila melanogaster LD47064p
           protein.
          Length = 256

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +2

Query: 20  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 199
           R    +L++  R+  A WK      I   + +YP  F+    N+ +  ++ +R  L+ +S
Sbjct: 6   RDKKVSLTKTDRKGLA-WKQRIVDDIRFCVGKYPNIFVFQVQNMRNSLLKDLRQELKKNS 64

Query: 200 IVLMGKNTMMR 232
             + GKN +M+
Sbjct: 65  RFIFGKNRVMQ 75


>AE013599-1019|AAF58844.1|  256|Drosophila melanogaster CG1381-PA
           protein.
          Length = 256

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +2

Query: 20  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 199
           R    +L++  R+  A WK      I   + +YP  F+    N+ +  ++ +R  L+ +S
Sbjct: 6   RDKKVSLTKTDRKGLA-WKQRIVDDIRFCVGKYPNIFVFQVQNMRNSLLKDLRQELKKNS 64

Query: 200 IVLMGKNTMMR 232
             + GKN +M+
Sbjct: 65  RFIFGKNRVMQ 75


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,096,069
Number of Sequences: 53049
Number of extensions: 403671
Number of successful extensions: 1570
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1562
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1170601320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)