Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0298
(401 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 108 1e-24
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 29 0.94
U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein. 29 1.7
L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine t... 29 1.7
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr... 29 1.7
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr... 29 1.7
AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated... 29 1.7
X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic int... 27 5.0
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co... 27 5.0
U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical pr... 27 5.0
U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate fi... 27 5.0
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 108 bits (260), Expect = 1e-24
Identities = 52/118 (44%), Positives = 74/118 (62%)
Frame = +2
Query: 47 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 226
M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60
Query: 227 MRKAIKDHLATIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRSKVQAPARPGAIAP 400
+RKA++ HL + E + ++ APA+ GAIAP
Sbjct: 61 IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAP 118
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 29.5 bits (63), Expect = 0.94
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +2
Query: 20 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 199
R +L+++ ++ K T K+N ++ +D+Y FI N+ S + IR + +S
Sbjct: 6 RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64
Query: 200 IVLMGKNTMMRKAI 241
GKN ++ A+
Sbjct: 65 RFFFGKNNVISIAL 78
>U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein.
Length = 532
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 273 LEGWIVARWSLMALRIIVF 217
+ GWIV W AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435
>L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine
transporter protein.
Length = 532
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 273 LEGWIVARWSLMALRIIVF 217
+ GWIV W AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435
>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical protein
ZK688.5b protein.
Length = 1595
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 218 NTMMRKAIKDHLATIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRSKVQAPARP 385
+T + + +K+H++ + SR + S+ T + ETS R N RS VQ A P
Sbjct: 1206 HTELLRMVKEHISRVPGSRATRNASQNTTSVNQSTETSPREQMN--RSPVQEAADP 1259
>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical protein
ZK688.5a protein.
Length = 1620
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 218 NTMMRKAIKDHLATIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRSKVQAPARP 385
+T + + +K+H++ + SR + S+ T + ETS R N RS VQ A P
Sbjct: 1206 HTELLRMVKEHISRVPGSRATRNASQNTTSVNQSTETSPREQMN--RSPVQEAADP 1259
>AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated
protein 17, isoform a protein.
Length = 532
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 273 LEGWIVARWSLMALRIIVF 217
+ GWIV W AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435
>X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 575
Score = 27.1 bits (57), Expect = 5.0
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +2
Query: 20 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 190
RS Y +S R D +W Y +K+ ++ + + + N ++++++R +L R
Sbjct: 285 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 339
Query: 191 GSSIVLMGKNTMMRKAIKD 247
G L G+N ++ K I+D
Sbjct: 340 GKMADLEGRNLLLEKQIED 358
>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore complex
protein protein12 protein.
Length = 1847
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -1
Query: 296 PLMCGNSFSRAGLSPGGL*WLCASLCFFP*ARYWSHVARYGSAASVAS 153
P C +F+R + WL S F P Y + R+ S+ S +S
Sbjct: 1530 PFECQVAFTRRSKIISAVNWLTVSAVFSPVFGYGCEIRRFDSSVSTSS 1577
>U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical
protein C33G8.12 protein.
Length = 358
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 11 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 115
K S ++ +SR+ +EDK + SN+++K QLL E
Sbjct: 159 KLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192
>U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate
filament, a protein 4 protein.
Length = 558
Score = 27.1 bits (57), Expect = 5.0
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +2
Query: 20 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 190
RS Y +S R D +W Y +K+ ++ + + + N ++++++R +L R
Sbjct: 268 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 322
Query: 191 GSSIVLMGKNTMMRKAIKD 247
G L G+N ++ K I+D
Sbjct: 323 GKMADLEGRNLLLEKQIED 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,015,362
Number of Sequences: 27780
Number of extensions: 195869
Number of successful extensions: 638
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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