Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0298
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   3.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   4.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   5.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   9.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   9.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   9.2  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 320 RVNTKPTLPLMCGNSFSRAGLSPG 249
           R +T P    +CG +FSR  L  G
Sbjct: 37  RTHTLPCKCHLCGKAFSRPWLLQG 60


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 332 LRSVTNCWRSKVQA 373
           LRSVTNC+ S + A
Sbjct: 68  LRSVTNCFVSSLAA 81


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 71  WKSNYFVKIIQLLDEYP 121
           W+   F  ++++LDE+P
Sbjct: 862 WRHWKFPNLVEVLDEFP 878


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 239 WLCASLCFFP*ARYWSHV 186
           W+C+S   FP   +W  V
Sbjct: 171 WICSSAISFPAIVWWRAV 188


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 38  LSRMGREDKATW 73
           L ++G E+KA W
Sbjct: 330 LGKLGEEEKADW 341


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 38  LSRMGREDKATW 73
           L ++G E+KA W
Sbjct: 330 LGKLGEEEKADW 341


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 38  LSRMGREDKATW 73
           L ++G E+KA W
Sbjct: 330 LGKLGEEEKADW 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,695
Number of Sequences: 438
Number of extensions: 2263
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)