Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0298
(401 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 79 1e-15
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 79 1e-15
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 76 1e-14
At5g13260.1 68418.m01523 expressed protein 28 2.0
At2g38160.1 68415.m04684 expressed protein 28 2.0
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 2.7
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 27 3.5
At5g59670.1 68418.m07481 leucine-rich repeat protein kinase, put... 27 4.7
At2g28960.1 68415.m03523 leucine-rich repeat protein kinase, put... 27 4.7
At1g75050.1 68414.m08717 thaumatin-like protein, putative / path... 27 4.7
At1g65150.2 68414.m07387 meprin and TRAF homology domain-contain... 27 4.7
At1g65150.1 68414.m07386 meprin and TRAF homology domain-contain... 27 4.7
At5g47400.1 68418.m05841 hypothetical protein 27 6.2
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 6.2
At1g14740.1 68414.m01762 expressed protein 27 6.2
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR... 26 8.2
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 79.0 bits (186), Expect = 1e-15
Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Frame = +2
Query: 47 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 226
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 227 MRKAIKDHLATIQPSRNCCHTSRATLASCSP----AETSLRSVT-NCWRSKVQAPARPGA 391
M+++++ H + S N + L + + L+ V+ + KV APAR G
Sbjct: 61 MKRSVRIH---SENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGL 117
Query: 392 IAP 400
+AP
Sbjct: 118 VAP 120
Score = 39.1 bits (87), Expect = 0.001
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +1
Query: 259 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKL 351
N A+ LLP ++GNVG +FT+GDL EV +++
Sbjct: 74 NTAILNLLPLLQGNVGLIFTKGDLKEVSEEV 104
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 78.6 bits (185), Expect = 1e-15
Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Frame = +2
Query: 47 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 226
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 227 MRKAIKDHLATIQPSR--NCCHTSRATLASCSPAETSLRSVT-NCWRSKVQAPARPGAIA 397
M+++++ H + N + + + L+ V+ + KV APAR G +A
Sbjct: 61 MKRSVRIHSENTGNTAILNLLPLLQGNVGLIF-TKGDLKEVSEEVAKYKVGAPARVGLVA 119
Query: 398 P 400
P
Sbjct: 120 P 120
Score = 39.1 bits (87), Expect = 0.001
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +1
Query: 259 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKL 351
N A+ LLP ++GNVG +FT+GDL EV +++
Sbjct: 74 NTAILNLLPLLQGNVGLIFTKGDLKEVSEEV 104
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 75.8 bits (178), Expect = 1e-14
Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Frame = +2
Query: 62 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI 241
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM++++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66
Query: 242 KDHLATIQPSRNCCHTSRATLASCSP----AETSLRSVT-NCWRSKVQAPARPGAIAP 400
+ H + N S L + + L+ V+ + KV APAR G +AP
Sbjct: 67 RIH---ADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 121
Score = 38.3 bits (85), Expect = 0.002
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +1
Query: 259 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKL 351
N A LLP ++GNVG +FT+GDL EV +++
Sbjct: 75 NQAFLSLLPLLQGNVGLIFTKGDLKEVSEEV 105
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 2.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 206 ARYWSHVARYGSAASVASPRYRH 138
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At2g38160.1 68415.m04684 expressed protein
Length = 299
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +2
Query: 257 TIQPSRNCCHTSRATLASC----SPAETSLRSVTNCWRSKVQAPARP 385
+I+PSR TSRATL S S +++ S+T +S +A A P
Sbjct: 142 SIKPSRQATPTSRATLPSTRLTNSAQKSNSESITTSIKSNTRASAFP 188
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 266 PSRNCCHTSRATLASCSPAETSLRSVTNCWRSKVQ 370
P R HT+R SC ETS +VT+ K +
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 256 DNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 354
+ P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At5g59670.1 68418.m07481 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 868
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 286 HIKGNVGFVFTRGDLVEVRDKLLEK 360
HI VGF RGD++E+ D L K
Sbjct: 774 HITQWVGFQMNRGDILEIMDPNLRK 798
>At2g28960.1 68415.m03523 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 880
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 283 PHIKGNVGFVFTRGDLVEVRDKLLEK 360
PHI VG++ T+GD+ V D L +
Sbjct: 782 PHIAAWVGYMLTKGDIENVVDPRLNR 807
>At1g75050.1 68414.m08717 thaumatin-like protein, putative /
pathogenesis-related protein, putative similar to
thaumatin-like protein [Arabidopsis thaliana]
GI:2435406, SP|P28493 Pathogenesis-related protein 5
precursor (PR-5) {Arabidopsis thaliana}; contains Pfam
profile: PF00314 Thaumatin family
Length = 257
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 206 LMGKNTMMRKAIKDHLATIQPSRNCCHTSRATLASCSPAETSLRSVTNC 352
LM +T + A K A CC + AT +CSP S + C
Sbjct: 178 LMDPHTGIIAACKSACAAFNSEEFCCTGAHATPQTCSPTHYSAMFKSAC 226
>At1g65150.2 68414.m07387 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 296
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 247 PPGDNPALEKLLPHIKGNVGFVFTRGDLVEVRDKL 351
P GD+ A +KL+ H+ G +G+L+ VR L
Sbjct: 196 PKGDSEADDKLIQHLHLADGETLAKGELIFVRVNL 230
>At1g65150.1 68414.m07386 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 296
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 247 PPGDNPALEKLLPHIKGNVGFVFTRGDLVEVRDKL 351
P GD+ A +KL+ H+ G +G+L+ VR L
Sbjct: 196 PKGDSEADDKLIQHLHLADGETLAKGELIFVRVNL 230
>At5g47400.1 68418.m05841 hypothetical protein
Length = 665
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 256 DNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLE 357
D AL L P +KG + RG L EVR + E
Sbjct: 214 DRIALSNLCPFLKGKIEEDSVRGSLCEVRLNVFE 247
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 26.6 bits (56), Expect = 6.2
Identities = 15/69 (21%), Positives = 35/69 (50%)
Frame = +2
Query: 140 ADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLATIQPSRNCCHTSRATLASCSP 319
ADN+ S++ +Q ++ SS+ +G ++ +++ + C H+ + LA P
Sbjct: 811 ADNMDSEEGKQTCVNDTSSSLTKVGVKG------SSNVLSVERTGGCSHSDESDLAMAVP 864
Query: 320 AETSLRSVT 346
+E + +V+
Sbjct: 865 SEGCMENVS 873
>At1g14740.1 68414.m01762 expressed protein
Length = 733
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -1
Query: 398 GQWHQDELELGLCFSNSLSR--TSTRSPRVNTKPTLPLMCGNS 276
GQ+HQ ++ SN+L +S SPR + TL +C NS
Sbjct: 37 GQYHQKGVDFLNVRSNNLDGGFSSKSSPRSGNELTLSYLCENS 79
>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1127
Score = 26.2 bits (55), Expect = 8.2
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 194 SSIVLMGKNTMMRKAIKDHLATIQPSRNCCHTSRATLASCSPAETSLRSVTN 349
SSI + K + + DHL TI N R L+ CS ++ L TN
Sbjct: 674 SSIQYLNKLNDLDMSYCDHLETIPSGVNLKSLDRLNLSGCSRLKSFLDIPTN 725
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,736,858
Number of Sequences: 28952
Number of extensions: 194137
Number of successful extensions: 648
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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