Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0296
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   2.1  
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    29   2.8  
08_01_0217 + 1738321-1739104,1739683-1739915,1740002-1740292,174...    28   8.5  
06_01_0476 - 3388176-3389267                                           28   8.5  

>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 414 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 313
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 390  GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRE 491
            G+  PR +  D  EW N  PT+   ++ + +PRE
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPRE 1426


>08_01_0217 +
           1738321-1739104,1739683-1739915,1740002-1740292,
           1740524-1740616,1740912-1741040,1741522-1741695,
           1741883-1741990,1742073-1742279
          Length = 672

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +2

Query: 449 HCPYLLSSETTAKGTGLGESRGKKTLLSLTLVWH 550
           H P L  S TT   T  G   G  TL  +   WH
Sbjct: 52  HLPPLPVSTTTTTSTSPGNGNGNATLFQVQPFWH 85


>06_01_0476 - 3388176-3389267
          Length = 363

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +1

Query: 355 RVNGGSNYDSLKVAKCLVI*LVTRMNGLTRFPLSLSTI*RNHSQGNGLGRITG--KEDPV 528
           R  G S+  SL   +C    + +    L    L +S + R H  GNG  R+ G    +P 
Sbjct: 244 REEGESSSSSLDARRCFS--MGSYQYVLAEASLQVS-VHRRHGDGNGRARLRGLAGANPA 300

Query: 529 ELDSSLAL*GDMRGVA*VGDRFARSSL 609
             D++ A  G   G    GD F+ S +
Sbjct: 301 GNDAAAAADGKKIGAGSKGDSFSVSKI 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,217,179
Number of Sequences: 37544
Number of extensions: 448811
Number of successful extensions: 1130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)