Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0296
(714 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5) 47 2e-05
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35) 45 5e-05
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 28 8.6
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 28 8.6
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 28 8.6
SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4) 28 8.6
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 28 8.6
SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 28 8.6
SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6) 28 8.6
SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8) 28 8.6
>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 52.8 bits (121), Expect = 3e-07
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +3
Query: 399 MPRHLISDAHEWINEIPTVPIYYLAKP 479
MPRHLISDAHEWINEIPTVPI +P
Sbjct: 1 MPRHLISDAHEWINEIPTVPIIEFLQP 27
>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 48.4 bits (110), Expect = 6e-06
Identities = 22/34 (64%), Positives = 25/34 (73%)
Frame = -2
Query: 587 SPTYATPLMSPYNARLESSSTGSSFPVILPSPFP 486
+PTY+TPLMS + RLESSSTGSSFP P P
Sbjct: 88 TPTYSTPLMSFHRVRLESSSTGSSFPADCAKPVP 121
Score = 44.4 bits (100), Expect = 9e-05
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Frame = -1
Query: 648 NRVSNETMKVVVFQRRSRETISHLCYTSHVSLQCQTRVKLNRV--FFPRDSPKPVPLAVV 475
+R+S +T++VVVF RR I+ Y++ + + R++ + FP D KPVPLAVV
Sbjct: 70 HRISKKTIRVVVFHRR----IATPTYSTPLMSFHRVRLESSSTGSSFPADCAKPVPLAVV 125
Query: 474 SLDSR 460
SLDSR
Sbjct: 126 SLDSR 130
>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
Length = 167
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +1
Query: 316 SALNVNVKKFKQARVNGGSNYDSL 387
+ALNV VKKF QARVNGGSNYDSL
Sbjct: 28 AALNVKVKKFNQARVNGGSNYDSL 51
>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
Length = 521
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 328 HSEHWAEITLRQHPRGPSQCFVLI 257
++EHWAEITLRQH PSQCFVLI
Sbjct: 48 NNEHWAEITLRQHRFRPSQCFVLI 71
>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +1
Query: 319 ALNVNVKKFKQARVNGGSNYDSL 387
ALNV VKKF QARVNG SNYDSL
Sbjct: 2 ALNVKVKKFNQARVNGWSNYDSL 24
>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +1
Query: 313 PSALNVNVKKFKQARVNGGSNYDS 384
PSALNV VKKF QARVNGG +S
Sbjct: 31 PSALNVKVKKFNQARVNGGDPLES 54
>SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 732
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 576 ISGRSFRAIVAEKPLLSLFH 635
+ GR F I KPLLSLFH
Sbjct: 374 VFGRDFDIITDHKPLLSLFH 393
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 576 ISGRSFRAIVAEKPLLSLFH 635
+ GR F I KPLLSLFH
Sbjct: 1317 VFGRDFDIITDHKPLLSLFH 1336
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 576 ISGRSFRAIVAEKPLLSLFH 635
+ GR F I KPLLSLFH
Sbjct: 79 VFGRDFDIITDHKPLLSLFH 98
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 220 LTVERRSYRIVGIAHETKPTRPYG*EDPRKA-GERGSGSSPKRKT 89
L+V R Y++V ++HE + R A +GSGSSP R T
Sbjct: 1038 LSVSGRCYKVVPLSHELCLVSKSLWNNRRSADNPKGSGSSPTRDT 1082
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 576 ISGRSFRAIVAEKPLLSLFH 635
+ GR F I KPLLSLFH
Sbjct: 608 VFGRDFDIITDHKPLLSLFH 627
>SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4)
Length = 300
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 576 ISGRSFRAIVAEKPLLSLFH 635
+ GR F I KPLLSLFH
Sbjct: 259 VFGRDFDIITDHKPLLSLFH 278
>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 576 ISGRSFRAIVAEKPLLSLFH 635
+ GR F I KPLLSLFH
Sbjct: 568 VFGRDFDIITDHKPLLSLFH 587
>SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 429
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 576 ISGRSFRAIVAEKPLLSLFH 635
+ GR F I KPLLSLFH
Sbjct: 347 VFGRDFDIITDHKPLLSLFH 366
>SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 576 ISGRSFRAIVAEKPLLSLFH 635
+ GR F I KPLLSLFH
Sbjct: 167 VFGRDFDIITDHKPLLSLFH 186
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 576 ISGRSFRAIVAEKPLLSLFH 635
+ GR F I KPLLSLFH
Sbjct: 773 VFGRDFDIITDHKPLLSLFH 792
>SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6)
Length = 309
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 576 ISGRSFRAIVAEKPLLSLFH 635
+ GR F I KPLLSLFH
Sbjct: 167 VFGRDFDIITDHKPLLSLFH 186
>SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 576 ISGRSFRAIVAEKPLLSLFH 635
+ GR F I KPLLSLFH
Sbjct: 608 VFGRDFDIITDHKPLLSLFH 627
>SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8)
Length = 391
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 576 ISGRSFRAIVAEKPLLSLFH 635
+ GR F I KPLLSLFH
Sbjct: 241 VFGRDFDIITDHKPLLSLFH 260
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,954,607
Number of Sequences: 59808
Number of extensions: 503949
Number of successful extensions: 1227
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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