Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0296
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z84574-7|CAB06544.3|  928|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL022593-3|CAA18635.3|  928|Caenorhabditis elegans Hypothetical ...    28   5.8  
AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z84574-7|CAB06544.3|  928|Caenorhabditis elegans Hypothetical
           protein F33E2.2a protein.
          Length = 928

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -1

Query: 558 SLQCQTRVKLNRVFFPRDSPKPVPLAVVSLDS 463
           S+   T V    VFF RDSP  VP  V+S  S
Sbjct: 649 SVNKSTAVPGQPVFFTRDSPSRVPHGVISCSS 680


>AL022593-3|CAA18635.3|  928|Caenorhabditis elegans Hypothetical
           protein F33E2.2a protein.
          Length = 928

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -1

Query: 558 SLQCQTRVKLNRVFFPRDSPKPVPLAVVSLDS 463
           S+   T V    VFF RDSP  VP  V+S  S
Sbjct: 649 SVNKSTAVPGQPVFFTRDSPSRVPHGVISCSS 680


>AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3b protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 155 RSCRFRFVRDPHDSVRPPFNGQLRTGTDKGNPTAN*NKALRWPSRVLTQCDFCPVL 322
           ++ R +F +  H  + PP  G++R   D GN        + W  +V++  DF  +L
Sbjct: 411 QAARIQFFQSLHTLIPPPIFGKMRKCVDSGND-------MDWCMQVISSDDFREIL 459


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,434,544
Number of Sequences: 27780
Number of extensions: 353215
Number of successful extensions: 880
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)