Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0296
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.0  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   6.6  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   6.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.8  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 183 IPTILYDRRSTVSSELARTRGIRLLIKTKHCD 278
           IPT+  D+ S + +    TR I  L +  HC+
Sbjct: 280 IPTLPSDKLSKIQTLKLATRYIDFLFQVLHCN 311


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 586 DRFARSSLKNHYFHCFITYSVRAE 657
           D F   S  + Y++C I Y+ RAE
Sbjct: 521 DEFVEDS--DDYWNCVIQYNTRAE 542


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 580 VGDRFARSSLKNHYFHCFI 636
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 580 VGDRFARSSLKNHYFHCFI 636
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 575 ATPLMSPYNARLESSSTGSSFP 510
           A  + SP   +   SSTGSS P
Sbjct: 347 AKQMASPEPPKSSESSTGSSIP 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,574
Number of Sequences: 438
Number of extensions: 4615
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)