Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0296
(714 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put... 30 1.3
At1g50260.1 68414.m05635 C2 domain-containing protein low simila... 30 1.3
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 30 1.8
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 30 1.8
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 29 4.0
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 29 4.0
At1g22340.1 68414.m02795 UDP-glucoronosyl/UDP-glucosyl transfera... 29 4.0
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative... 28 5.3
At5g03420.1 68418.m00295 dentin sialophosphoprotein-related cont... 28 5.3
At5g22740.1 68418.m02656 glycosyl transferase family 2 protein s... 28 7.1
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 28 7.1
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 9.3
>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 884
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 95 TFRTGSGPAFSGLPRIFLAVRSCRFRFVRDPHDSVRPPFNGQLRT 229
T+ T SG R++L+ R+ D HD + PFNG T
Sbjct: 179 TYVTQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222
>At1g50260.1 68414.m05635 C2 domain-containing protein low
similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
contains Pfam profile PF00168: C2 domain
Length = 675
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 112 RTRVLRPSADLPSRKVVSVSFRARSPRFCTTAVQRSAQN 228
R+RVLRPS + + + +S FR S T R A N
Sbjct: 37 RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -1
Query: 675 LSTAHRFRPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 550
LS+ + RP+R S V ++ +R+T SHL Y++ V L+
Sbjct: 15 LSSENPTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -1
Query: 675 LSTAHRFRPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 550
LS+ + RP+R S V ++ +R+T SHL Y++ V L+
Sbjct: 15 LSSENPTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -1
Query: 378 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 268
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 33 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -1
Query: 378 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 268
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 32 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68
>At1g22340.1 68414.m02795 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase; similar
to UDP-glucose glucosyltransferase GI:3928543 from
[Arabidopsis thaliana]
Length = 487
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -2
Query: 314 GRNHIASTPARAIAMLCFN*QSDSPCPCQF*ADR*TAVVQNRGDRARNETDTTLR-LGRS 138
G N + A + M+C+ S+ P C+F D ++ D R E +T +R L
Sbjct: 383 GWNSTLESLAGGVPMICWPCFSEQPTNCKFCCDEWGVGIEIGKDVKREEVETVVRELMDG 442
Query: 137 AEGRRTRVRIQ 105
+G++ R + +
Sbjct: 443 EKGKKLREKAE 453
>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
strong similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 239
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 119 RVRIQSET*DDFRECHIKYIQFLRPH 42
R+RIQ DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197
>At5g03420.1 68418.m00295 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 583
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 467 SSETTAKGTGLGESRGKKTLLSLTLVWHCKET*EV*HKWEIVSRDR 604
SSETT G +G+S G ++S L E+ H E+ S DR
Sbjct: 374 SSETTKGGEYIGDSLGGPRIMSTPLNGSALALKEIIHATEVNSSDR 419
>At5g22740.1 68418.m02656 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 534
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 47 ASKTVYI*YDTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDPHDSVRPPF 211
ASK + I Y RENR+ ++ G+ GL R + V+ C + + D P F
Sbjct: 154 ASKGINIRYQIRENRVGYKAGA--LKEGLKRSY--VKHCEYVVIFDADFQPEPDF 204
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 390 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENHGERR 521
G +P + +SD + INE+ P +AK +E + +G +R
Sbjct: 70 GGGLPNNGVSDTNSQINEVTVTP-QVIAKETVKENGLQKNGGKR 112
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 709 TLGTKHRAPADIIDRAPLPP*P 644
T+G+ HR+ AD ++ +PLP P
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAP 993
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,699,769
Number of Sequences: 28952
Number of extensions: 337256
Number of successful extensions: 826
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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