Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0295
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999...    30   1.2  
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753...    27   6.4  
04_04_0597 + 26502819-26502853,26503030-26503171,26503929-265041...    27   6.4  
04_04_1161 + 31374240-31374403,31374495-31374812,31375347-313754...    27   8.5  

>01_06_0116 - 26595570-26596607,26596964-26598353,26599386-26599923,
            26600562-26601453
          Length = 1285

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 396  VVENVPTIADYAPPSVLNTQLSLDDLAPPSVLQTD 500
            +VE    + D APP ++     ++D APP +++ D
Sbjct: 1050 IVEPDEGMEDAAPPKIVEPDEGMEDAAPPKIVEPD 1084



 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 396  VVENVPTIADYAPPSVLNTQLSLDDLAPPSVLQTD 500
            ++E    + D APP ++     ++D APP +++ D
Sbjct: 1035 IIEPDVGMEDVAPPKIVEPDEGMEDAAPPKIVEPD 1069



 Score = 28.7 bits (61), Expect = 2.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 429  APPSVLNTQLSLDDLAPPSVLQTD 500
            APP ++   + ++D+APP +++ D
Sbjct: 1031 APPVIIEPDVGMEDVAPPKIVEPD 1054


>05_03_0031 -
           7534327-7534480,7535546-7535649,7535724-7535793,
           7535889-7535932,7536042-7536146,7536223-7536344,
           7536807-7536894,7536966-7537052,7537718-7537786,
           7537859-7538188,7539777-7539824,7540003-7540069,
           7540150-7540208,7541220-7541453,7541536-7541601,
           7541684-7541883,7542104-7542197,7542295-7542414,
           7542596-7542703,7542808-7542871,7543378-7543409,
           7546049-7548007
          Length = 1407

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 387 FQPVVENVPTIADYAPPSVLNTQLSLD 467
           F PV ++ P +    PPSV +++ +LD
Sbjct: 250 FDPVADSAPAMESPLPPSVASSEANLD 276


>04_04_0597 +
           26502819-26502853,26503030-26503171,26503929-26504186,
           26504276-26504407,26504834-26504980
          Length = 237

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 426 NRL*WGHFLQQAERKNYEYFNLI*SHNNMSWFNKTKSKNLKRKN 295
           N L   H LQQA++  Y Y   + + NN+   NK  S+ ++R +
Sbjct: 169 NHLMSTHVLQQAQQIQYLYDQAVEATNNVERGNKELSQAIQRNS 212


>04_04_1161 +
           31374240-31374403,31374495-31374812,31375347-31375493,
           31375674-31375754,31375799-31375886,31375999-31376176,
           31376705-31376794,31376795-31376866,31377247-31377257
          Length = 382

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 332 LIKQKAKTLKEKIT*YILNFNYKDLYPIAPGAPCQPHNIV 213
           L++ KA  + + +   I  FN  DL  +  G P +PHNI+
Sbjct: 168 LVRYKAAEIIKDLIPQIPEFN--DLLKLPKGGPIKPHNIL 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,851,326
Number of Sequences: 37544
Number of extensions: 174695
Number of successful extensions: 340
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)