Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0295
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97005-4|AAB52283.1|  314|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>U97005-4|AAB52283.1|  314|Caenorhabditis elegans Hypothetical
           protein F19F10.5 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 219 YCSLLKFYFINCFP*LLFTFYYINLYTKSLYHITS 115
           Y  LL+F+ + CF  LL TF+ I+ Y  + + ++S
Sbjct: 26  YLFLLRFFILICFFKLLLTFFLISNYLITDFKMSS 60


>Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical
           protein T14D7.2 protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 231 TWGTWGYWVKVF 266
           TW +WGYW+K +
Sbjct: 377 TWTSWGYWLKFY 388


>Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical
           protein C47B2.1 protein.
          Length = 488

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 219 YCSLLKFYFINCFP*LLFTFYYINLYTKSLYHITSGNRNVRL 94
           YCSLL ++F   FP    T   +N      + +  G+ N+ L
Sbjct: 25  YCSLLFYFFTVDFPYFFLTKCSLNFRITKFFCVVFGSLNIIL 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,698,792
Number of Sequences: 27780
Number of extensions: 168437
Number of successful extensions: 347
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)