Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0295
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   5.5  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   9.5  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 201 FYFINCFP*LLFTFYYINLYTKSLYH 124
           F F  C P +L  +YY  + +  + H
Sbjct: 216 FTFSYCIPMILIIYYYSQIVSHVVNH 241


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 147 LYTKSLYHITSGNRNV 100
           L    LYH+  GN N+
Sbjct: 616 LLKSGLYHVLRGNENI 631


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +2

Query: 203 LSKEQYYVVDMGHLGLLGK 259
           + K+ + ++D GH  ++GK
Sbjct: 33  VQKQLHCILDRGHCDVIGK 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,657
Number of Sequences: 438
Number of extensions: 2579
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)