Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0293
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    35   0.012
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    29   0.76 
SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.4  
SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   7.1  
SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe...    25   9.4  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   9.4  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   9.4  

>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 35.1 bits (77), Expect = 0.012
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = -3

Query: 490 AGALTGALYKANLGLTAMIVGGSLGA 413
           AGALTGALYK+  GL AM +  SL A
Sbjct: 167 AGALTGALYKSTRGLRAMAISSSLVA 192


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +3

Query: 363 VIFNIPIIKSPPI--VLNTAPREP--PTIIAVNPKFALYNAPV 479
           V   IP I +PP+  V++ +P  P  P+ +  +P + ++ AP+
Sbjct: 127 VSLGIPSISNPPVDTVISDSPTSPHPPSFVQPHPPYGIFAAPI 169


>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 643 KEKTARLCNNWICQRCLQ 590
           K+   R+CN+W+CQ+  +
Sbjct: 81  KKPRVRICNSWMCQQAAE 98


>SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 488 CSCVLDEVVSPRYADIVVAIKLNIPVKILNFH 583
           C+   DEV+S    D+V    +N+P++ L F+
Sbjct: 40  CAITDDEVMSYNNEDMVPFSAINLPIRFLIFY 71


>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 434 CWWFPRSCIKYNRWTFNYWNIKNYW 360
           CWW   + I YN   F  W ++  W
Sbjct: 255 CWWDSSTSITYNGIEFATW-VRRVW 278


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 646 CKEKTARLCNNWICQRCLQVGME 578
           CK+   +   N+ C RCL+ G+E
Sbjct: 120 CKKHKIKCVGNFPCGRCLKKGLE 142


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 293 SSNREIIKNQTRRLTRHHDTIVQEQGEVKIEE 198
           + N EI  N+   L  H D  + E+G+ KI +
Sbjct: 747 NDNHEIAMNKRLSLKSHADNKIDERGKKKIRQ 778


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,560
Number of Sequences: 5004
Number of extensions: 66227
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)