Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0293
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0826 - 28453018-28453284,28453286-28453594                       30   1.8  
02_05_0275 - 27377480-27378079                                         30   1.8  
10_08_0647 - 19576672-19577259                                         30   2.4  
07_01_0469 - 3552409-3553368                                           29   3.2  
03_05_0670 - 26594292-26594785,26595222-26595531                       29   4.2  
02_02_0492 - 10907529-10907629,10907714-10907953,10908035-109080...    29   4.2  
06_03_0905 + 25843547-25844314                                         29   5.6  
03_01_0102 - 826827-827411                                             29   5.6  
07_03_0633 + 20120560-20123464,20123608-20123672                       28   7.4  

>04_04_0826 - 28453018-28453284,28453286-28453594
          Length = 191

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -3

Query: 490 AGALTGALYKANLGLTAMIVGGSLGAV 410
           AG  TGALY+A  G  A IVG S+G +
Sbjct: 144 AGIGTGALYRAAAGPRAAIVGSSVGGL 170


>02_05_0275 - 27377480-27378079
          Length = 199

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -3

Query: 505 IEYTTAGALTGALYKANLGLTAMIVGGSLGAV 410
           +    AGA  GALY+   G  +MIV G LG V
Sbjct: 141 VNTVAAGASAGALYRIASGPRSMIVAGILGGV 172


>10_08_0647 - 19576672-19577259
          Length = 195

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -3

Query: 523 SWRYNLIEYTTAGALTGALYKANLGLTAMIVGGSLG 416
           SW  NL  YT  G L+GA+  A LGL     G   G
Sbjct: 61  SWGENLTYYTGVGYLSGAVAGAALGLRDAAAGAEPG 96


>07_01_0469 - 3552409-3553368
          Length = 319

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/48 (39%), Positives = 20/48 (41%)
 Frame = +3

Query: 360 PVIFNIPIIKSPPIVLNTAPREPPTIIAVNPKFALYNAPVSAPAVVYS 503
           PV   +     PP     AP  PP   AV    AL   PVSAPA   S
Sbjct: 198 PVRIQLAPRNPPPSAAPAAPPVPPAAPAVPAAPALAPVPVSAPASALS 245


>03_05_0670 - 26594292-26594785,26595222-26595531
          Length = 267

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 357 TPVIFNIPIIKSPPIVL-NTAPREPPTIIAVNPKFALYNAPVSAPA 491
           +P +   P I+ PP  L   APR+ P++  +  + +L+ +  +APA
Sbjct: 107 SPSLARSPAIREPPPTLATAAPRQFPSLKTLAHRTSLFTSSANAPA 152


>02_02_0492 -
           10907529-10907629,10907714-10907953,10908035-10908098,
           10908416-10908721,10909347-10909561,10909656-10909950,
           10910493-10910597,10911112-10911180,10911433-10911519,
           10911953-10913704,10914964-10915054,10915217-10915488
          Length = 1198

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 636 KLQDYVTIGFAKGAYKWGWKLSIFTGMFSLIATTISAYRG 517
           K  D  TI   K      WKL +FT + +L+  T+S+Y G
Sbjct: 205 KYTDVTTINLVKALVLTTWKLILFTAVCALL-RTVSSYVG 243


>06_03_0905 + 25843547-25844314
          Length = 255

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 378 PIIKSPPIVLNTAPREPPTIIAVNPKFALYNAPVSAPAVV 497
           P+ + PP+   T P   P ++ V P       PV+ P VV
Sbjct: 94  PVTRPPPVTYPTPPVTTPPVV-VGPPVTYPTPPVTTPPVV 132



 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 357 TPVIFNIPIIKSPPIVLNTAPREPPTIIAVNPKFALYNAPVSAP 488
           TP +   P++  PP+   T P   P ++ V P       PV+ P
Sbjct: 105 TPPVTTPPVVVGPPVTYPTPPVTTPPVV-VGPPVTYPTPPVTYP 147


>03_01_0102 - 826827-827411
          Length = 194

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 532 ICISWRYNLIEYTTAGALTGALYKANLGLTAMIVGGSLGAV 410
           + +  R + I   TAG  TGAL++A  G  +  V G++G V
Sbjct: 135 VAVRDRDDWINSVTAGLGTGALFRAANGPRSAAVAGAIGGV 175


>07_03_0633 + 20120560-20123464,20123608-20123672
          Length = 989

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 778 CIQLCIHIVRCICWC-LFRRICLISRSLLV 692
           C  LC H+ +C+C+C +F    L  +++L+
Sbjct: 401 CEHLCDHLRKCLCYCSIFPSGYLFEKNMLI 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,324,903
Number of Sequences: 37544
Number of extensions: 378190
Number of successful extensions: 898
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)