Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0293
(789 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21274| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9) 32 0.46
SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_35066| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_43080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009) 29 5.7
SB_37246| Best HMM Match : RVT_1 (HMM E-Value=3.6e-05) 28 7.5
SB_50094| Best HMM Match : RVT_1 (HMM E-Value=1.7e-09) 28 7.5
SB_30579| Best HMM Match : RVT_1 (HMM E-Value=0.00034) 28 7.5
>SB_21274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 50.8 bits (116), Expect = 1e-06
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = -1
Query: 690 FIENNQATAYKTVGDAKKKLQDYVTIGFAKGAYKWGWKLSIFTGMFSLIATTISAYR 520
F+ N+ T YK+ A++ Q T+GF + +WGW++ F G++S + ++YR
Sbjct: 58 FLRQNKLTVYKSAMHAQRSFQSAKTLGFVRYGCRWGWRVGWFAGLYSFMLAATTSYR 114
>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
Length = 483
Score = 32.3 bits (70), Expect = 0.46
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 428 WFPRSCIKYNRWTFNYWNIKNYWCSYERYTT 336
W + YN W+ N W+ N W +Y ++T
Sbjct: 42 WSHNNWSTYNNWSHNNWSTYNNWSTYNNWST 72
Score = 31.5 bits (68), Expect = 0.80
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 440 YDCWWFPRSCIKYNRW-TFNYWNIKNYWCSYERYTT 336
Y+ W + YN W T N W+I N W +Y+ +T
Sbjct: 337 YNNWSTHNNWSTYNNWSTHNNWSILNNWSTYDNCST 372
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 428 WFPRSCIKYNRW-TFNYWNIKNYWCSYERYTT 336
W + YN W T+N W+ N W +Y ++T
Sbjct: 53 WSHNNWSTYNNWSTYNNWSTYNNWSTYNNWST 84
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 440 YDCWWFPRSCIKYNRW-TFNYWNIKNYWCSYERYTT 336
Y+ W + +N W T+N W+ N W +Y+ ++T
Sbjct: 373 YNNWSTHNNWSTHNNWSTYNNWSTYNNWSTYDNWST 408
Score = 29.9 bits (64), Expect = 2.5
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -2
Query: 404 YNRW-TFNYWNIKNYWCSYERYTT 336
YN W T+N W+ N W +Y ++T
Sbjct: 67 YNNWSTYNNWSTYNNWSTYHNWST 90
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = -2
Query: 452 RIDCYDCWWFPRSCIKYNRW-------TFNYWNIKNYWCSYERYTT 336
++D ++ W + YN W T+N W+ N W +Y ++T
Sbjct: 297 QLDTHNNWSTHNNWSTYNNWSTHNNWSTYNNWSTHNNWSTYNNWST 342
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 440 YDCWWFPRSCIKYNRW-TFNYWNIKNYWCSYERYTT 336
Y+ W + YN W T N W+ N W ++ ++T
Sbjct: 313 YNNWSTHNNWSTYNNWSTHNNWSTYNNWSTHNNWST 348
Score = 28.3 bits (60), Expect = 7.5
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -2
Query: 404 YNRW-TFNYWNIKNYWCSYERYTT 336
+N W T+N W+ N W +Y ++T
Sbjct: 331 HNNWSTYNNWSTHNNWSTYNNWST 354
>SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 32.3 bits (70), Expect = 0.46
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 440 YDCWWFPRSCIKYNRW-TFNYWNIKNYWCSYERYTT 336
Y+ W + YN W T+N W+ N W +Y ++T
Sbjct: 39 YNNWSTHNNWSTYNNWSTYNNWSTHNNWSTYNNWST 74
Score = 31.9 bits (69), Expect = 0.61
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 440 YDCWWFPRSCIKYNRW-TFNYWNIKNYWCSYERYTT 336
Y+ W + YN W T N WN +N W ++ ++T
Sbjct: 81 YNNWSTHNNWSTYNNWSTHNNWNTRNNWSTHNNWST 116
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 440 YDCWWFPRSCIKYNRW-TFNYWNIKNYWCSYERYTT 336
Y+ W + +N W T+N W+ N W +Y ++T
Sbjct: 51 YNNWSTYNNWSTHNNWSTYNNWSTHNNWSTYNNWST 86
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 431 WWFPRSCIKYNRW-TFNYWNIKNYWCSYERYTT 336
W + +N W T+N W+ N W +Y ++T
Sbjct: 24 WSIHNNWSTHNNWSTYNNWSTHNNWSTYNNWST 56
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 404 YNRW-TFNYWNIKNYWCSYERYTTSIIQNQR 315
+N W T+N W+ N W +Y ++T N R
Sbjct: 75 HNNWSTYNNWSTHNNWSTYNNWSTHNNWNTR 105
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 440 YDCWWFPRSCIKYNRW-TFNYWNIKNYWCSYERYTT 336
Y+ W + YN W T N W+ N W ++ ++T
Sbjct: 57 YNNWSTHNNWSTYNNWSTHNNWSTYNNWSTHNNWST 92
>SB_35066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 228 DYCVMMSCQSSCLIFDDFSIA 290
D C+ M C SSC IF+ FS A
Sbjct: 85 DKCLPMGCSSSCKIFETFSTA 105
>SB_43080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 368
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 612 GFAKGAYKWGWKLSIFTGMFSLIATTISAYRG 517
G A A+KWGW+ I FS + TI + G
Sbjct: 26 GTANTAWKWGWEFHIALFCFSFLVLTIYSLCG 57
>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
Length = 938
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 37 HLQYLQT*N*IGNSFNLKCFAKAFSIKH 120
H+ YL+T +G F LKCFA+ + KH
Sbjct: 559 HINYLET---LGAFFALKCFARDVTCKH 583
>SB_37246| Best HMM Match : RVT_1 (HMM E-Value=3.6e-05)
Length = 843
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 228 DYCVMMSCQSSCLIFDDFSIA 290
D C+ M C SSC F+ FS A
Sbjct: 465 DRCMPMGCSSSCKTFETFSTA 485
>SB_50094| Best HMM Match : RVT_1 (HMM E-Value=1.7e-09)
Length = 392
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 228 DYCVMMSCQSSCLIFDDFSIA 290
D C+ M C SSC F+ FS A
Sbjct: 245 DRCMPMGCSSSCKTFETFSTA 265
>SB_30579| Best HMM Match : RVT_1 (HMM E-Value=0.00034)
Length = 654
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 228 DYCVMMSCQSSCLIFDDFSIA 290
D C+ M C SSC F+ FS A
Sbjct: 213 DRCMPMGCSSSCKTFETFSTA 233
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,451,414
Number of Sequences: 59808
Number of extensions: 484132
Number of successful extensions: 1598
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1567
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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