Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0293
(789 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025715-5|AAP13755.1| 281|Caenorhabditis elegans Hypothetical ... 45 5e-05
Z81027-2|CAB02687.1| 282|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z75549-3|CAA99915.1| 301|Caenorhabditis elegans Hypothetical pr... 30 2.2
U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical pr... 30 2.2
U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z81063-5|CAB02956.1| 242|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z74043-7|CAA98539.2| 705|Caenorhabditis elegans Hypothetical pr... 29 2.9
AY661556-1|AAV70493.1| 714|Caenorhabditis elegans acetylcholine... 29 3.8
AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear recep... 29 3.8
AF078786-4|AAC26944.4| 714|Caenorhabditis elegans Sodium:neurot... 29 3.8
AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormo... 29 3.8
Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical p... 29 5.0
AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear recep... 29 5.0
Z81077-3|CAB03067.1| 527|Caenorhabditis elegans Hypothetical pr... 28 6.6
L25598-6|AAA27939.2| 886|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF016415-7|AAW88412.1| 296|Caenorhabditis elegans Serpentine re... 28 6.6
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 28 8.8
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 28 8.8
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 28 8.8
U41029-1|AAF99951.1| 479|Caenorhabditis elegans Hypothetical pr... 25 9.7
>AC025715-5|AAP13755.1| 281|Caenorhabditis elegans Hypothetical
protein Y38F2AR.3 protein.
Length = 281
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = -1
Query: 681 NNQATAYKTVGDAKKKLQDYVTIGFAKGAYKWGWKLSIFTGMFSLIATTISAYR 520
NN Y + DA K+ DY + FAKG + G+K ++ +G +AT I+AYR
Sbjct: 114 NNVGRKYLSPSDAVKRKIDYAIVRFAKGGFGVGFKCALISGSIVFLATHITAYR 167
>Z81027-2|CAB02687.1| 282|Caenorhabditis elegans Hypothetical
protein AH10.3 protein.
Length = 282
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -2
Query: 134 YKTIECLIENAFAKHL-RLKELPI*FYVCKYCKCCTL 27
Y + +CL+E F ++ RL PI + +C++C CC++
Sbjct: 121 YWSKKCLLELIFFENFARLSNFPIGYILCQHCVCCSI 157
>Z75549-3|CAA99915.1| 301|Caenorhabditis elegans Hypothetical
protein T19C4.3 protein.
Length = 301
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 449 IDCYDCWWFPRSCIKYNRWTFNYWNIKNYWCSYERY-TTSIIQNQRI 312
I C+DC P N + N++ +Y +Y +Y TT++I R+
Sbjct: 67 ITCFDCLMVPVYMFFDNNFPMNFFTAMSYHMAYVQYSTTALISVNRL 113
>U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical
protein F59A3.2b protein.
Length = 687
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 339 RISLIRTPVIFNIPI--IKSPPIVLNTAPREPPTIIAVNPKFALYN 470
R++L+ TP + +PI +K+ P N PR PP I +P AL+N
Sbjct: 526 RVTLLPTPTLVFVPISPVKNLPSDFN--PRIPPPQIYSSPGQALFN 569
>U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical
protein F59A3.2a protein.
Length = 975
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 339 RISLIRTPVIFNIPI--IKSPPIVLNTAPREPPTIIAVNPKFALYN 470
R++L+ TP + +PI +K+ P N PR PP I +P AL+N
Sbjct: 526 RVTLLPTPTLVFVPISPVKNLPSDFN--PRIPPPQIYSSPGQALFN 569
>Z81063-5|CAB02956.1| 242|Caenorhabditis elegans Hypothetical
protein F15D3.7 protein.
Length = 242
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -3
Query: 490 AGALTGALYKANLGLTAMIVGGSLG 416
AGALTGA+Y++ GL A VG +G
Sbjct: 193 AGALTGAIYRSPHGLKASGVGALVG 217
>Z74043-7|CAA98539.2| 705|Caenorhabditis elegans Hypothetical
protein T19B10.5 protein.
Length = 705
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = +1
Query: 28 NVQHLQYLQT*N*IGNSFNL-----KCFAKAFSI-KHSIVLYTILVYYIFVKL 168
N+ QYL N +GN FNL F F I +++++ + + +YY F L
Sbjct: 8 NLDTFQYLTFINRLGNKFNLTFDISSLFVLPFLISRNALLFFNVFLYYFFTDL 60
>AY661556-1|AAV70493.1| 714|Caenorhabditis elegans
acetylcholine/choline transporter protein.
Length = 714
Score = 29.1 bits (62), Expect = 3.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 428 WFPRSCIKYNRWTFNYWNIKNYWC 357
W + I+Y + F YW+I WC
Sbjct: 566 WLDWNSIQYESYQFPYWSILTAWC 589
>AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear receptor
NHR-90 protein.
Length = 408
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 637 KTARLCNNWICQRCLQVGMEIKYFYRN 557
+ AR C +RC + GM+I+YF N
Sbjct: 69 EAARFCKPCRLKRCYEAGMKIEYFQHN 95
>AF078786-4|AAC26944.4| 714|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 6
protein.
Length = 714
Score = 29.1 bits (62), Expect = 3.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 428 WFPRSCIKYNRWTFNYWNIKNYWC 357
W + I+Y + F YW+I WC
Sbjct: 566 WLDWNSIQYESYQFPYWSILTAWC 589
>AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 90 protein.
Length = 393
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 637 KTARLCNNWICQRCLQVGMEIKYFYRN 557
+ AR C +RC + GM+I+YF N
Sbjct: 54 EAARFCKPCRLKRCYEAGMKIEYFQHN 80
>Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical
protein F09C6.9 protein.
Length = 448
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = -3
Query: 742 CWCLFRRICLISRSLLVFY*KXXXXXXXXXXRCKEKTARLCNNWICQRCLQVGME 578
C FRR+CL RS K KT C QRCL VGM+
Sbjct: 70 CKTFFRRMCLSGRSF------SCKLDRDCFDLTKRKTPAKCRACRLQRCLSVGMD 118
>AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear receptor
NHR-116 protein.
Length = 448
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = -3
Query: 742 CWCLFRRICLISRSLLVFY*KXXXXXXXXXXRCKEKTARLCNNWICQRCLQVGME 578
C FRR+CL RS K KT C QRCL VGM+
Sbjct: 70 CKTFFRRMCLSGRSF------SCKLDRDCFDLTKRKTPAKCRACRLQRCLSVGMD 118
>Z81077-3|CAB03067.1| 527|Caenorhabditis elegans Hypothetical
protein F36A2.2 protein.
Length = 527
Score = 28.3 bits (60), Expect = 6.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 508 GCISTICRYCCGYQTEH 558
GC ++ C+ CC YQ++H
Sbjct: 488 GCANSKCKKCCRYQSKH 504
>L25598-6|AAA27939.2| 886|Caenorhabditis elegans Hypothetical
protein C06G4.1 protein.
Length = 886
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 355 RMSDIRQALYKIKESRTDHYNQAIEKSSKIKHDD 254
R D +A + I+ RTD+ QAIEK +I H++
Sbjct: 736 RSFDNNEACFSIR-GRTDNIKQAIEKIEEITHEN 768
>AF016415-7|AAW88412.1| 296|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 33 protein.
Length = 296
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 91 CFAKAFSIKHSIVLYTILVYYIFVKLRYDTLNFN*TSS 204
CF ++I SI+ ++ILV+ I + ++ N N SS
Sbjct: 168 CFYSFWTIHKSIIFFSILVFSILISIKLFIWNTNGQSS 205
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 360 PVIFNIPIIKSPPIVLNTAPREPP 431
PV+ + P+ + PIV+ P+EPP
Sbjct: 1651 PVVISEPVPEPVPIVVEEPPKEPP 1674
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 360 PVIFNIPIIKSPPIVLNTAPREPP 431
PV+ + P+ + PIV+ P+EPP
Sbjct: 1651 PVVISEPVPEPVPIVVEEPPKEPP 1674
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 360 PVIFNIPIIKSPPIVLNTAPREPP 431
PV+ + P+ + PIV+ P+EPP
Sbjct: 472 PVVISEPVPEPVPIVVEEPPKEPP 495
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 360 PVIFNIPIIKSPPIVLNTAPREPP 431
PV+ + P+ + PIV+ P+EPP
Sbjct: 472 PVVISEPVPEPVPIVVEEPPKEPP 495
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 360 PVIFNIPIIKSPPIVLNTAPREPP 431
PV+ + P+ + PIV+ P+EPP
Sbjct: 1651 PVVISEPVPEPVPIVVEEPPKEPP 1674
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 360 PVIFNIPIIKSPPIVLNTAPREPP 431
PV+ + P+ + PIV+ P+EPP
Sbjct: 1651 PVVISEPVPEPVPIVVEEPPKEPP 1674
>U41029-1|AAF99951.1| 479|Caenorhabditis elegans Hypothetical
protein F47G3.3 protein.
Length = 479
Score = 25.4 bits (53), Expect(2) = 9.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 610 ICQRCLQVGMEIKYFYRNVQFDSH 539
IC+R ++ G E+ +F N FD +
Sbjct: 270 ICKRVIEHGNEVLFFANNENFDEN 293
Score = 20.6 bits (41), Expect(2) = 9.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 787 LLNCIQLCIHIVRCICWCLFRRIC 716
+L I LC + V W R+IC
Sbjct: 248 ILTYIDLCDNPVTAEVWTGLRKIC 271
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,859,471
Number of Sequences: 27780
Number of extensions: 380126
Number of successful extensions: 1129
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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