Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0293
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               25   0.61 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   4.3  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   7.5  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 82  NLKCFAKAFSIKHSIV 129
           NLKC+ K F  KH I+
Sbjct: 54  NLKCYLKCFMTKHGIL 69


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 386 NYWNIKNYWCSYERYTTS 333
           NYWN KN    Y+R + S
Sbjct: 103 NYWNTKNCVNPYDRDSLS 120


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 389 FNYWNIKNYWCSYERYTTSIIQN 321
           +NY N  NY  +Y  Y   +  N
Sbjct: 89  YNYSNYNNYNNNYNNYNKKLYYN 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,681
Number of Sequences: 438
Number of extensions: 4802
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)