Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0293
         (789 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27850.1 68417.m03999 proline-rich family protein contains pr...    30   1.5  
At4g08370.1 68417.m01382 proline-rich extensin-like family prote...    30   1.5  
At2g06510.2 68415.m00722 replication protein, putative similar t...    30   1.5  
At2g06510.1 68415.m00721 replication protein, putative similar t...    30   1.5  
At5g38560.1 68418.m04662 protein kinase family protein contains ...    28   8.1  

>At4g27850.1 68417.m03999 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 577

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 576 LSIFTGMFSLIATTISAYRGDTTSSSTQLQVHLPEHCIKQ 457
           + I+ G  S   T +  YRG ++   T+   HL E+C+++
Sbjct: 437 VEIYRGSSSKPLTNVEIYRGSSSKPLTKRARHLEEYCVRR 476


>At4g08370.1 68417.m01382 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 350

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +3

Query: 345 SLIRTPVIFNIPIIKSPPIVLNTAPREPPTIIAVNPKFALYNAPVSAPAVVYS 503
           S+ R P I++ P    PP V N+APR P    ++ P   +YN+    P  +YS
Sbjct: 255 SVPRIPFIYSSP--PPPPYVYNSAPRIPFIYSSLPPPPYVYNSAPRVP-FIYS 304



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +3

Query: 345 SLIRTPVIFNIPIIKSPPIVLNTAPREPPTIIAVNPKFALYNAPVSAPAVVYS 503
           S+ R P I++ P    PP V N+APR P    +  P   +YN+    P  +YS
Sbjct: 195 SVPRIPFIYSSP--PPPPYVYNSAPRIPFIYSSPPPPPYVYNSAPRVP-FIYS 244


>At2g06510.2 68415.m00722 replication protein, putative similar to
           replication protein A 70kDa [Oryza sativa (japonica
           cultivar-group)] GI:13536993; contains InterPro entry
           IPR004365: OB-fold nucleic acid binding domain
          Length = 617

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = -3

Query: 646 CKEKTARL-CNNWICQRCLQVGMEIKYFY-RNVQFDSHNNI 530
           C +K  R   N W+C RC Q   E  Y Y   VQ   H  +
Sbjct: 489 CNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGL 529


>At2g06510.1 68415.m00721 replication protein, putative similar to
           replication protein A 70kDa [Oryza sativa (japonica
           cultivar-group)] GI:13536993; contains InterPro entry
           IPR004365: OB-fold nucleic acid binding domain
          Length = 640

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = -3

Query: 646 CKEKTARL-CNNWICQRCLQVGMEIKYFY-RNVQFDSHNNI 530
           C +K  R   N W+C RC Q   E  Y Y   VQ   H  +
Sbjct: 512 CNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGL 552


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 378 PIIKSPPIVLNTAPREPPTIIAVNPKFALYNAPVSAPAVV 497
           P+I SPP  + ++P  PP +IA  P       P + P  V
Sbjct: 75  PVITSPPPTVASSP-PPPVVIASPPPSTPATTPPAPPQTV 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,239,135
Number of Sequences: 28952
Number of extensions: 325352
Number of successful extensions: 918
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)