Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0291
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 27 3.2
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 27 3.2
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 27 4.2
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 26 5.6
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 26 5.6
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 26 5.6
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 25 9.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.7
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 25 9.7
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 25 9.7
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 3.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 194 IVHPSKGNVSWD*TVVRQVSLPY 262
I+HP ++SWD + R++ +PY
Sbjct: 451 IMHPWFRDISWDKILTRKIEVPY 473
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -3
Query: 186 LANFVRNDRKSRH-RRIKKQRRYERLAAT 103
LANF+R DR+S H +K++ Y ++A++
Sbjct: 696 LANFIRYDRESVHIPEFQKRKSYSQVASS 724
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +1
Query: 499 IQNGDATSKPIWIAEIDAIGFFLNTCITAPKSGYNSVRCRGSE*SVGYRARIRNHGH 669
+ G P W+AE+ AI F++ + AP S + + SV R ++ H
Sbjct: 34 VPTGSKVELPFWLAEVLAINSFVSIHMPAPFSSVVRNALKANPNSVSIRDITTHYYH 90
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 103 CGSQAFIATLLFDPSMSALPIIANKIRQAL 192
CGS I +LF S S L + KI Q L
Sbjct: 511 CGSSPAIKLILFSKSFSVLQSTSEKIEQLL 540
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -2
Query: 550 HRSPRSKWASTSRLRFECETRLVKSHCLEPPD-SRGSTVSISLPDSA 413
H P +WA + R E+ SH + P+ S ST S + S+
Sbjct: 112 HIGPNGEWAKRRKPRTTVESNASSSHLVSKPESSHPSTGSFEVKSSS 158
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 393 SKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRRRDVEA 527
S+A A LA + + RE KQ + T R+SH ++RR+++A
Sbjct: 164 SEARARLANTQGKKAKRKDRE----KQLELTRRLSHLQKRRELKA 204
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 409 LASALEAFRHNPADGSSHHRPLGRVHEPNVR 317
LA +A R+NP+ G+ H R R+ + VR
Sbjct: 56 LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/64 (26%), Positives = 24/64 (37%)
Frame = -2
Query: 454 SRGSTVSISLPDSARLASALEAFRHNPADGSSHHRPLGRVHEPNVRNCGSSRTEQYYYRN 275
S STVS S S+ ++ + PA SSH L + S+ +Y N
Sbjct: 367 SFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHN 426
Query: 274 DKPS 263
S
Sbjct: 427 STSS 430
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 409 LASALEAFRHNPADGSSHHRPLGRVHEPNVR 317
LA +A R+NP+ G+ H R R+ + VR
Sbjct: 56 LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 498 HSKRRRDVEAHLDRGDRCYRFFS 566
H KR E H ++ +RC+ +FS
Sbjct: 243 HFKREMGSELHREQFERCFAYFS 265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,310,249
Number of Sequences: 5004
Number of extensions: 69250
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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