Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0291
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0721 + 20401217-20401360,20401689-20401809,20401969-204020...    32   0.63 
03_05_0183 - 21681673-21682524                                         31   1.4  
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808...    29   3.3  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   4.4  
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235           29   5.8  
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597...    28   7.7  
08_01_0399 + 3524723-3525272,3525468-3525544,3526816-3526861,352...    28   7.7  
04_04_1156 - 31319747-31320085,31320556-31320706,31320795-313210...    28   7.7  

>08_02_0721 +
           20401217-20401360,20401689-20401809,20401969-20402067,
           20402790-20402851,20403680-20403797,20404004-20404343,
           20404435-20404582,20405043-20405144,20405240-20405359,
           20405812-20405895,20405974-20406101,20408314-20408389,
           20408556-20408631,20408800-20408876,20408975-20409031,
           20409411-20409555,20409634-20409806,20409928-20410054,
           20410090-20410192,20410492-20410688,20410946-20411097
          Length = 882

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = -3

Query: 345 SAECMNQMSETAVPLVLSSITIATTSHQ*GKLTCL-TTV*SQLTFPFDG*TIQRLANFVR 169
           SA C+N +      +VL  +  A      G L  L T++ SQL+F     +++R+   ++
Sbjct: 732 SASCINIIDPVEQAVVLCQVEKAKE----GMLNQLYTSISSQLSFVVSMRSVERIEELIQ 787

Query: 168 NDRKSRHRR--IKKQ 130
            D   +HRR  IKKQ
Sbjct: 788 EDHSVKHRREKIKKQ 802


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +1

Query: 109 SQAFIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLDRRETG 249
           SQAF A LL D + +A+P++  + R A + +  + E E    RR TG
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPAPE-TETETEEEPPRQRRRTG 274


>10_08_1005 -
           22179407-22180122,22180210-22180653,22180737-22180861,
           22180939-22181169,22181250-22181805,22181896-22182312,
           22182405-22183216,22183653-22183738,22184464-22184534,
           22184553-22185573,22186018-22186062,22186252-22186326,
           22186797-22186871
          Length = 1557

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +3

Query: 378 LCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRRRDVEA-HLDRGDR 548
           L L+  K + S + S +D LTV  +++G ++  ++ +  S  K+R DV A H    DR
Sbjct: 217 LLLDKKKDKLSTSASSRD-LTVNYKDNGINRLRNYCAEESTGKKRSDVHAMHRSSSDR 273


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 48  YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 155
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
          Length = 1293

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +3

Query: 339 RPSGRWCELPSAGL-CLNASKAEASLAESGK--DMLTVEPRESGGSKQCDFTSRVSHSKR 509
           RP+G+WC + +  L  L   +A  SLAE  +  +    + R  G +      +R S +K+
Sbjct: 469 RPTGKWCTVHNTSLHDLADCRAVKSLAERTRKWEEERRQERREGKAPAAPSGNRRSEAKQ 528

Query: 510 RRDVEAHLDRGDRCYRF 560
           +   E  +D GD   RF
Sbjct: 529 KAPAE-DVDDGDDDLRF 544


>08_01_0682 +
           5974622-5974745,5976182-5976371,5976953-5977024,
           5977482-5977553,5977688-5977759,5977842-5977913,
           5978690-5978761,5978855-5978926,5979017-5979091,
           5979529-5979594,5979821-5979885,5979975-5980354,
           5980438-5980636,5980713-5980763,5980955-5981073,
           5981190-5981400,5981524-5981755,5981842-5981992,
           5982089-5982447,5982750-5982768
          Length = 890

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 424 ARICSLSSPESREALNNVTLLVAFRIQNGDATSKPIWIAE 543
           A +C+  SP  R +++ V  ++A  I+  +  +KP +I E
Sbjct: 798 ALLCTQGSPHQRPSMSRVMAILAGDIEVTEVVTKPSYITE 837


>08_01_0399 +
           3524723-3525272,3525468-3525544,3526816-3526861,
           3527121-3527235,3528252-3528306,3528432-3528557
          Length = 322

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -2

Query: 547 RSPRSKWASTSRLRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFR 383
           R+PR +W ST   RF     L+  H    P S    + +     A + S L+ +R
Sbjct: 158 RAPRMRWTSTLHARFVHAVELLGGHDRATPKSVLELMDVKDLTLAHVKSHLQMYR 212


>04_04_1156 - 31319747-31320085,31320556-31320706,31320795-31321026,
            31321121-31321331,31321646-31321764,31321835-31322032,
            31322163-31322364,31322456-31322832,31322937-31323007,
            31326264-31326329,31326414-31326479,31326761-31326835,
            31326944-31327018,31327115-31327186,31327683-31327904,
            31328012-31328083,31328425-31328496,31329410-31329481,
            31329716-31329896,31332132-31332237
          Length = 992

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 424  ARICSLSSPESREALNNVTLLVAFRIQNGDATSKPIWIAE 543
            A +C+  SP  R +++ V  ++A  ++  +  +KP +I E
Sbjct: 913  ALLCTQGSPHQRPSMSRVVTMLAGDVEVPEVVTKPSYITE 952


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,284,553
Number of Sequences: 37544
Number of extensions: 489127
Number of successful extensions: 1203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)