Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0291
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical pr...    28   9.2  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    28   9.2  
AC024200-14|AAF36005.1|  557|Caenorhabditis elegans Hypothetical...    28   9.2  

>Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical
           protein K10G9.2 protein.
          Length = 240

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = -2

Query: 550 HRSPRSKWASTSRLRFECETRLVKSHCLEPPDSRGSTVSISLPDSA-----RLASALEAF 386
           HR   S     SR+     ++  +S+ L   + +G ++S+SLP SA     R  +  +AF
Sbjct: 104 HRHSASGSRRQSRVYSNLHSKRKRSNSLTNYN-KGQSLSVSLPPSARHTPHRFVNEEDAF 162

Query: 385 RHNPADGSSH 356
           R++ A   SH
Sbjct: 163 RNSMASSDSH 172


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
            protein Y43D4A.5 protein.
          Length = 1648

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 463  PPDSRGSTVSISLPDSARLASALEAFRHNPAD-GSSHHRPLGRVHEPNVRNCGSSR 299
            PP S  S V+ + P   +    +E+  H PAD GS    PLG    P  R  G+ +
Sbjct: 868  PPGSASSMVAHTAPGPLKSHRNVES-GHAPADFGSGSVEPLGSPPGPQTRPIGTGQ 922


>AC024200-14|AAF36005.1|  557|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.4 protein.
          Length = 557

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 681 QETAMTMITNSSSVPYRLFRAPTSN*VISGLRSRDARVKKKTDSIDL 541
           ++ ++  I N  + P  + + P +N        +DA+VKK  D  DL
Sbjct: 95  RQRSVEQIANMENTPESVLKPPDNNGKPKPSHEKDAKVKKNDDDDDL 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,486,294
Number of Sequences: 27780
Number of extensions: 397327
Number of successful extensions: 916
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)