Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0291
         (815 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56130.1 68414.m06445 leucine-rich repeat family protein / pr...    29   4.9  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    28   8.5  

>At1g56130.1 68414.m06445 leucine-rich repeat family protein / protein
            kinase family protein contains Pfam domains PF00560:
            Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1032

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
 Frame = +1

Query: 424  ARICSLSSPESREALNNVTLLVAFRIQNGDATSKPIWIAE---IDAIGFFLNTCITAPKS 594
            A +C+ +S   R  ++ V  +++  ++ GD TSKP ++++    D  G  L+       +
Sbjct: 941  ALLCTQTSHALRPPMSRVVAMLSGDVEIGDVTSKPGYVSDWRFDDTTGSSLSGFQIKDTT 1000

Query: 595  GYN-SVRCRGSE 627
            GY+ S+   GSE
Sbjct: 1001 GYSMSLVAPGSE 1012


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 348 GRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD 479
           G W +L         +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,584,481
Number of Sequences: 28952
Number of extensions: 376716
Number of successful extensions: 816
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)