Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0290
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p...    27   3.6  
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa...    27   3.6  
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce...    27   3.6  
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy...    27   3.6  
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc...    27   3.6  
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc...    27   3.6  
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy...    27   3.6  
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos...    27   3.6  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   8.2  

>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 243 CYLDDLLFHNDSYLYRVHIDEKYTNVVKIKLS*INQIMNQ 362
           CY+DD+L H+ S    V    K+   V  KL   N I+NQ
Sbjct: 563 CYMDDILIHSKSESEHV----KHVKDVLQKLKNANLIINQ 598


>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 243 CYLDDLLFHNDSYLYRVHIDEKYTNVVKIKLS*INQIMNQ 362
           CY+DD+L H+ S    V    K+   V  KL   N I+NQ
Sbjct: 563 CYMDDILIHSKSESEHV----KHVKDVLQKLKNANLIINQ 598


>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 243 CYLDDLLFHNDSYLYRVHIDEKYTNVVKIKLS*INQIMNQ 362
           CY+DD+L H+ S    V    K+   V  KL   N I+NQ
Sbjct: 563 CYMDDILIHSKSESEHV----KHVKDVLQKLKNANLIINQ 598


>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 243 CYLDDLLFHNDSYLYRVHIDEKYTNVVKIKLS*INQIMNQ 362
           CY+DD+L H+ S    V    K+   V  KL   N I+NQ
Sbjct: 563 CYMDDILIHSKSESEHV----KHVKDVLQKLKNANLIINQ 598


>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 243 CYLDDLLFHNDSYLYRVHIDEKYTNVVKIKLS*INQIMNQ 362
           CY+DD+L H+ S    V    K+   V  KL   N I+NQ
Sbjct: 563 CYMDDILIHSKSESEHV----KHVKDVLQKLKNANLIINQ 598


>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1333

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 243 CYLDDLLFHNDSYLYRVHIDEKYTNVVKIKLS*INQIMNQ 362
           CY+DD+L H+ S    V    K+   V  KL   N I+NQ
Sbjct: 563 CYMDDILIHSKSESEHV----KHVKDVLQKLKNANLIINQ 598


>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 243 CYLDDLLFHNDSYLYRVHIDEKYTNVVKIKLS*INQIMNQ 362
           CY+DD+L H+ S    V    K+   V  KL   N I+NQ
Sbjct: 563 CYMDDILIHSKSESEHV----KHVKDVLQKLKNANLIINQ 598


>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 243 CYLDDLLFHNDSYLYRVHIDEKYTNVVKIKLS*INQIMNQ 362
           CY+DD+L H+ S    V    K+   V  KL   N I+NQ
Sbjct: 563 CYMDDILIHSKSESEHV----KHVKDVLQKLKNANLIINQ 598


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 338 MNQSNNESTVESGLALPLALLTSMVDGNHSPP 433
           +N SNN S+   G  LP   LT + + ++ PP
Sbjct: 72  INNSNNSSSNTGGNVLPNPALTPVRNMSNKPP 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,531
Number of Sequences: 5004
Number of extensions: 58349
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)