Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0290
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0204 + 6385739-6385865,6386405-6386554,6386852-6386937,638...    28   8.6  

>03_02_0204 +
           6385739-6385865,6386405-6386554,6386852-6386937,
           6387335-6387429,6387536-6387661,6387756-6387894
          Length = 240

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 330 LFSLHLYIFHQCEHDRDTSRYGIRGRRD 247
           LFS+H+   H+ +H  D+  Y   GR D
Sbjct: 128 LFSIHIKNIHKGKHGSDSEAYDTEGRFD 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,231,902
Number of Sequences: 37544
Number of extensions: 334031
Number of successful extensions: 798
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)