Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0290
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44575| Best HMM Match : DUF444 (HMM E-Value=0.84)                   28   8.8  
SB_13761| Best HMM Match : MoeZ_MoeB (HMM E-Value=8.7)                 28   8.8  
SB_28960| Best HMM Match : PMT (HMM E-Value=3.5)                       28   8.8  
SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)                  28   8.8  

>SB_44575| Best HMM Match : DUF444 (HMM E-Value=0.84)
          Length = 451

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 612 SLESRAYALFICSLFIIVHY 553
           S + RAY +F CSL +I+H+
Sbjct: 299 SAKYRAYTMFCCSLSMIIHF 318


>SB_13761| Best HMM Match : MoeZ_MoeB (HMM E-Value=8.7)
          Length = 275

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 452 DEHTADLVVSGYRRPWTSAMPGAEPSRFLPLIHY 351
           +E   +L+   +R P+   +P  + S F+P IHY
Sbjct: 109 EEFWDELLSFSFRVPYNRCLPLVDCSHFMPAIHY 142


>SB_28960| Best HMM Match : PMT (HMM E-Value=3.5)
          Length = 196

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 315 LYIFHQCEHDRDTSRYGIRGRRDSNAMSHTRLITLMMCME*TLQTIA 175
           L+      +D   S YG+  + D N + +  ++ +MM M   + TIA
Sbjct: 124 LFAVTDVNYDNGNSGYGVNDKDDMNDVDNYVMVMMMMMMTMIIVTIA 170


>SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)
          Length = 925

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 595 ICSIYLFIIHYCSLL-FKQYILNSDELYFK*WNY 497
           I S  L  ++YCS++ F   ++ + ELY+K WN+
Sbjct: 393 IFSALLVFVNYCSVITFFPTVVITYELYWKNWNW 426


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,953,393
Number of Sequences: 59808
Number of extensions: 431470
Number of successful extensions: 866
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)