Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0289
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-6|CAA93744.2|  461|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical pr...    28   9.2  
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr...    28   9.2  
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p...    28   9.2  

>Z69883-6|CAA93744.2|  461|Caenorhabditis elegans Hypothetical
           protein C27C12.2 protein.
          Length = 461

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = +2

Query: 704 HLRYSLTDVPPQSNSPPGSVSNRITREF*TATSVSAT 814
           HL  SL +  PQSNS P +V  R+ R   T TS S T
Sbjct: 248 HLGSSLQNEHPQSNSRPSTVIPRVQR---TNTSASLT 281


>Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical
           protein T27D12.3 protein.
          Length = 146

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 292 RPSGRWCEATIRGLCLNASKAEAS 221
           RPSG WC     GL L  ++ EAS
Sbjct: 35  RPSGPWCVKLFVGLYLQGNRNEAS 58


>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +3

Query: 93  DPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPRMVAS 272
           +  GL R   + + ET  +K H    P S   +V      + R A A   F   PR+   
Sbjct: 789 ESRGLHRHEEKAQIETSTIKIH---EPSSPPPSVHKFGAVNTRAAPAPVQFMQTPRIAVK 845

Query: 273 HHRPLG 290
            H P G
Sbjct: 846 IHEPTG 851


>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +3

Query: 93  DPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPRMVAS 272
           +  GL R   + + ET  +K H    P S   +V      + R A A   F   PR+   
Sbjct: 789 ESRGLHRHEEKAQIETSTIKIH---EPSSPPPSVHKFGAVNTRAAPAPVQFMQTPRIAVK 845

Query: 273 HHRPLG 290
            H P G
Sbjct: 846 IHEPTG 851


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,030,608
Number of Sequences: 27780
Number of extensions: 401500
Number of successful extensions: 1102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)