Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0286
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0177 + 15140414-15140777,15142067-15142239                       31   1.1  
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490...    29   3.3  
08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821           28   5.7  
01_01_0094 - 730484-731570,732030-732715                               28   5.7  
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331...    28   7.5  
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377...    27   9.9  
01_01_0097 - 741881-742977,743100-743320,743438-744156                 27   9.9  

>03_03_0177 + 15140414-15140777,15142067-15142239
          Length = 178

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -1

Query: 304 LDGSISLSPLYPVPTIDCTSESLRSSIRVSPDFDLTRHSSPSFGSQHLCSE 152
           +DG+ + SP  P P +DCT+E+L+  +    D+     ++PS  S+  C E
Sbjct: 24  VDGATASSPA-PAPAVDCTAEALK--LADCLDYVTPGKTAPSRPSKLCCGE 71


>07_03_1231 +
           25047067-25047262,25047876-25048045,25048897-25049030,
           25049122-25049369,25049799-25049904,25049992-25050130,
           25050258-25050385,25050472-25050733
          Length = 460

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 516 LLTKLAHLAPSSDLRLHRSSKPEFSPI 436
           +L  L +LAP  DLR+  SSKP F  I
Sbjct: 258 MLETLVNLAPVLDLRIFSSSKPSFIKI 284


>08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821
          Length = 716

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 609 CCHERPTPFMVSHERFLGALTLRLVHPTAPVLLTKL 502
           C  E   PF   HE    ALTL +  PTA  L+ KL
Sbjct: 324 CIRELAVPFF-HHEVVKRALTLGMESPTAEALIVKL 358


>01_01_0094 - 730484-731570,732030-732715
          Length = 590

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 642 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 547
           + G +LP  P  C + P P +V   RF   LT
Sbjct: 552 VDGLQLPSRPFFCDDEPLPLLVDSYRFSSELT 583


>01_06_1087 -
           34430521-34430899,34432336-34432806,34432926-34433112,
           34433470-34433599,34433794-34434125,34434566-34435050,
           34435185-34435752,34436579-34436640,34437569-34437636
          Length = 893

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 433 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 272
           K E  LRSF       + LP     K+ I A++  GN+ GRN    GS  L  L+
Sbjct: 93  KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147


>11_01_0489 +
           3776563-3776692,3776995-3777073,3777532-3777840,
           3778828-3778898,3778975-3779213,3779306-3779383,
           3779734-3780156,3780416-3780661,3780886-3780978,
           3781480-3781527
          Length = 571

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 258 IVGTGYRGERLIEPSSSWFRPKFPSG 335
           + GTG      + PSS+WF P+  SG
Sbjct: 14  VFGTGPLPPASLSPSSAWFDPELSSG 39


>01_01_0097 - 741881-742977,743100-743320,743438-744156
          Length = 678

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 642 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 547
           + G +LP  P  C + P P +V   RF   LT
Sbjct: 640 VGGLQLPSRPFFCDDEPLPLLVDSCRFSSELT 671


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,713,658
Number of Sequences: 37544
Number of extensions: 417860
Number of successful extensions: 951
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)