Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0286
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35257| Best HMM Match : Sec8_exocyst (HMM E-Value=0.59)             48   9e-06
SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   3e-04
SB_30216| Best HMM Match : TIL (HMM E-Value=3.1)                       42   4e-04
SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_6863| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   4e-04
SB_5602| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   4e-04
SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1)               41   8e-04
SB_6844| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   0.001
SB_29359| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_49647| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_19053| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_41657| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)           29   3.3  
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   3.3  
SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_40592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041)                   29   4.4  
SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_23657| Best HMM Match : Sushi (HMM E-Value=0)                       28   7.7  

>SB_35257| Best HMM Match : Sec8_exocyst (HMM E-Value=0.59)
          Length = 1060

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 23/37 (62%), Positives = 26/37 (70%)
 Frame = +2

Query: 548 VKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 658
           ++   +RS D  KGVG S QQDGGHGS NPLR  QRL
Sbjct: 9   LRCQSRRSSDPTKGVGCSRQQDGGHGSWNPLRKGQRL 45


>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 38

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 20/29 (68%), Positives = 21/29 (72%)
 Frame = -2

Query: 243 NRYGPPSGFPLTST*PGIVHHLSGPSICA 157
           NRY PP  FPL S   GIVHHLSGP+ CA
Sbjct: 1   NRYEPPPEFPLASPYSGIVHHLSGPNRCA 29


>SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = -1

Query: 244 ESLRSSIRVSPDFDLTRHSSPSFGSQHLCS 155
           ESLR+S RVS  F L RHSSPSFGSQ + S
Sbjct: 35  ESLRASTRVSSGFTLFRHSSPSFGSQQMRS 64


>SB_30216| Best HMM Match : TIL (HMM E-Value=3.1)
          Length = 212

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +1

Query: 604 TAGRWPWKSESAKECATT 657
           TAGRWPWK ESAKEC TT
Sbjct: 1   TAGRWPWKLESAKECVTT 18


>SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +1

Query: 604 TAGRWPWKSESAKECATT 657
           TAGRWPWK ESAKEC TT
Sbjct: 1   TAGRWPWKLESAKECVTT 18


>SB_6863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +1

Query: 604 TAGRWPWKSESAKECATT 657
           TAGRWPWK ESAKEC TT
Sbjct: 80  TAGRWPWKLESAKECVTT 97


>SB_5602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = +2

Query: 548 VKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLR 643
           ++   +RS D  KGVG S QQDGGHGS NPL+
Sbjct: 9   LRCQSRRSSDPTKGVGCSRQQDGGHGSWNPLK 40


>SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1)
          Length = 276

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = -1

Query: 541 FGSSHSASSAYKIGPLGTVIRSPASSFE*AGVLTHLKFENR 419
           FGSS  ASS Y+ GP  T I  P  + +  G+LT+LKFENR
Sbjct: 78  FGSSRIASSGYQNGPTRTRIHCPGFNKQ-VGLLTNLKFENR 117


>SB_6844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/29 (68%), Positives = 21/29 (72%)
 Frame = -1

Query: 553 LNTTFGSSHSASSAYKIGPLGTVIRSPAS 467
           LN  FGSS  ASSAY+ GPLGT I  PAS
Sbjct: 17  LNRAFGSSRIASSAYQNGPLGTRIHCPAS 45


>SB_29359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 33

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = +3

Query: 564 NAHGTP*KALVAHDSRTVAMEVGIR 638
           +AH TP K LVA DSRTVAMEVGIR
Sbjct: 9   DAHQTPQKVLVALDSRTVAMEVGIR 33


>SB_49647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +2

Query: 548 VKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLR 643
           ++   +RS D  KGVG S QQDGGHGS NP +
Sbjct: 9   LRCQSRRSSDPTKGVGCSRQQDGGHGSWNPAK 40


>SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = -2

Query: 243 NRYGPPSGFPLTST*PGIVHH 181
           NRY PP  FPL S   GIVHH
Sbjct: 1   NRYEPPPEFPLASPYSGIVHH 21


>SB_19053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 509 QNWPTWHRHQISGFIVRVSRSSHPFKV 429
           Q WPT + H +SGF    SR+S+ FKV
Sbjct: 32  QKWPTRNSHSLSGFNY-ASRTSYQFKV 57


>SB_41657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
 Frame = -2

Query: 606 CHERPTPFMVSHERFLGALTLRLVHPTAPVLLTKLAH---LAPSSDLRLHRSSKPEFSPI 436
           CH+R  P +V     LGAL LR+    A   +   AH    AP     L+ + K + S +
Sbjct: 243 CHKRDVPVLVDGAHALGALPLRIAELGADYYVAN-AHKWLCAPKGCAALYVADKHKGS-V 300

Query: 435 *SLRIG*GRFGPNASNHSLYRMRLF*NFISTPAI 334
             L +  G FG   +   L+R+  F   +S   I
Sbjct: 301 RCLTVS-GGFGRGFTTEFLFRVLDFWETVSPDRI 333


>SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)
          Length = 308

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 163 NAGTRKMVNYAWSGRSQGKP*WRTVAILTCNRSSE 267
           NA  RK + + W       P WRTV ++  N + E
Sbjct: 75  NAARRKEIRFTWGTDFLPSPRWRTVFLIGANDNQE 109


>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 3369

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 656 VVAHSLADSDFHGHRPAVMSDQRLSWCPMSVF 561
           +  H + ++DF G R A+M+D +L  C  S+F
Sbjct: 386 LTTHFMDEADFLGDRIAIMADGQLRCCGSSLF 417


>SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 163 NAGTRKMVNYAWSGRSQGKP*WRTVAILTCNRSSE 267
           NA  RK + + W       P WRTV ++  N + E
Sbjct: 79  NAARRKEIRFTWGTDFLPTPRWRTVFLIGANDNQE 113


>SB_40592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -1

Query: 553 LNTTFGSSHSASSAYKIGP 497
           LN  FGSS  ASSAY+ GP
Sbjct: 17  LNRAFGSSRIASSAYQKGP 35


>SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041)
          Length = 128

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
 Frame = +3

Query: 111 LPRRLVSNQ*MKARSEHKC----WDPKDGELCLVRSKSGETLMEDRSDSDV 251
           L RR VSN   + +++H+     +  +DG+   V++K G++L++   D+DV
Sbjct: 29  LARRYVSNGKEQTKAKHETVSITFVDRDGDRQTVKAKVGDSLLDVAKDNDV 79


>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 755

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -2

Query: 654 RCTLLSGFRLPWPPSCCHERPTPFMVSHE-RFLGALTLRLVHPTAPVLLTKL-AHLAPSS 481
           +C L      P         PT  +  ++ RF   +T+ L+HP +PV+ ++  A +    
Sbjct: 183 KCGLCGSTPTPTEKPSSPSLPTTKVTKNDARFCSEITVLLLHPLSPVIRSRSDARIVIFE 242

Query: 480 DLRLH 466
           D+++H
Sbjct: 243 DVKMH 247


>SB_23657| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 331

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = +3

Query: 144 KARSEHKCWDPKDGELCLVRSKSGETLMEDRSDSDVQSIVGTGYRGERLIEPSSSWFRPK 323
           K + + +CW PK      V SKSG+   +      +Q   GT   G    +     + P 
Sbjct: 210 KPKCKRRCWVPKPPLRGQVLSKSGKDYAKHGEHLRIQCNSGTDAVGPSQSQCKDGRWSPN 269

Query: 324 FP 329
           FP
Sbjct: 270 FP 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,907,709
Number of Sequences: 59808
Number of extensions: 455908
Number of successful extensions: 1111
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)