Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0284
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 30 0.28
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 29 0.64
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 27 1.9
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 27 1.9
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 3.4
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 27 3.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 4.5
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 26 4.5
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 5.9
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.9
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 26 5.9
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 7.8
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 7.8
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 30.3 bits (65), Expect = 0.28
Identities = 26/94 (27%), Positives = 45/94 (47%)
Frame = -3
Query: 645 KRNRHDLRLGRSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHYIKY*LAKTNITHEHR 466
+RN LR R+ +++R + + F ++ ++ L P ++Y K+++T E +
Sbjct: 367 RRNLKSLRSSRNLH-QQSRKSLDENKPNSFS--NVSKLKRL-PWNMRYLDLKSDLTVEKK 422
Query: 465 PDPAPARIRFPSKPDTPRSSEPILIPKLRIQFAD 364
D P+R R P P SSE L P + AD
Sbjct: 423 SDIYPSRARISISPMLPTSSEDNLHPLQPLTTAD 456
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 29.1 bits (62), Expect = 0.64
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 622 ARKIRGRPENAGPDPVRNVRRFSRV 548
AR I GRPEN G ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 468 RPDPAPARIRFPSKPDTPRSSEPILIPKLRIQFAD 364
RP+ APAR +F P+ + P +P L +++ D
Sbjct: 1003 RPNTAPARQKFARPPNIETAPIPRPLPNLPMEYND 1037
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = -2
Query: 451 GPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH-----LGDLLRIWVRTG 287
G HP ++ R+ P+ N Y+ + + L + L + + +G ++ ++V +G
Sbjct: 252 GSHPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSG 311
Query: 286 AT-SPRTSLT*ISRSAESIRTP 224
+T SP+ + I + +SI TP
Sbjct: 312 STVSPKYT---IQQYVQSIGTP 330
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 165 PWNPIEGRYGSEREEHRICGGVRILSADLEIQVRDVRGDVAP 290
P+ P+EG Y + ++ HRI R A LE ++R V+ P
Sbjct: 3 PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -3
Query: 636 RHDLRLG-RSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHYIKY*LAKTNITHE 472
+ D +LG + A + +V + S+ D +E H+KY+Q + ++ LAK +I E
Sbjct: 1053 KEDTKLGEKCANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 466 TRPGTGPHPLPVQTRHAPVLRANPYSEVTDPICRLP 359
+RP T P P P + + APV + + V PI P
Sbjct: 980 SRPRTAPIPEPEEQKKAPVEKKDAEKSVQAPIPAQP 1015
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 478 ARTSTRPGTGPHPLPVQTRHAPV 410
A+ S P P PL +QTR AP+
Sbjct: 410 AQFSPYPAVAPSPLALQTRGAPI 432
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -1
Query: 278 STYIPHLNFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQA 147
STY P L V D N F I+P+Y WN A A
Sbjct: 257 STYWPALAAPVYPSMKDVPNNPFT-PFSPINPYYAKSWNHTASA 299
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -2
Query: 217 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 80
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +1
Query: 430 GREAD--AGRCRVWSMFVRYVRFSELVFYIMRPQKLYIF 540
GR D G+ VW +VR+V F E LY++
Sbjct: 103 GRPQDNGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 363 FPYLHYSID*RLFTLETCCGYGYEPARHL 277
+P+ S+D R+F LE+ GY EP L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 264 SPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 103
+P + P VSGH LR+ IS SM +ERS R ++ + +
Sbjct: 611 TPLAKKPLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,038
Number of Sequences: 5004
Number of extensions: 68816
Number of successful extensions: 222
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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