Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0284
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 32 0.38
06_01_1013 - 7931756-7935109 31 0.66
06_01_0350 + 2534422-2535615 31 1.2
12_02_0407 - 18654134-18654172,18654913-18655803 30 2.0
01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305 29 2.7
05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563 29 3.5
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 29 3.5
12_02_0969 - 24936399-24936699,24936779-24936949,24937032-249378... 29 4.7
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 4.7
05_01_0608 + 5429901-5429982,5430610-5431058,5436758-5437183,543... 29 4.7
05_01_0511 + 4256220-4256828,4256920-4257175,4257247-4257309,425... 29 4.7
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 4.7
07_03_0078 - 13147741-13148913 28 6.2
12_02_0096 - 13573612-13573632,13573846-13573884,13574160-135744... 28 8.1
07_01_0917 + 7735696-7735896,7735907-7736404,7736481-7736813,773... 28 8.1
06_02_0356 - 15118498-15119217,15120020-15120238,15120320-15120634 28 8.1
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 28 8.1
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705 28 8.1
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 466 TRPGTGPHPLPVQTRHAPVLRANPYSEVTDPICRLPL 356
T+P + H L + RH P L+A P S + C+LPL
Sbjct: 100 TKPLSTGHSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 31.5 bits (68), Expect = 0.66
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 300 GYEPARHLHVHPSPEFQGPQRVSGHR 223
G+EP R + +HP+P+ + P R+ G +
Sbjct: 879 GWEPKRFITIHPTPKSKAPARILGSK 904
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 170 PWNSNAQAEKKTLPGPLGGVFRP 102
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 27 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 191
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305
Length = 196
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 443 SASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNR 288
SAS P+P +P P S SL R+ S +Y G W A + R
Sbjct: 15 SASLPSPAQPAPASLSL-RAVSPRARLSASYAAFPIGGIGAWAAATPASSGR 65
>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
Length = 571
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 473 NIDQTRHRPASASRPNPTRPGPQSQSLFRSYGSNLPTSLT 354
++ Q +P A RP RP PQ Q S G+ P S+T
Sbjct: 512 SLTQANRQPGYAPRPQINRPAPQPQKHAPS-GNTAPNSVT 550
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 445 HPLPVQTRHAPVLRANP 395
H +PVQ H+PVL+ NP
Sbjct: 340 HSVPVQKNHSPVLKTNP 356
>12_02_0969 -
24936399-24936699,24936779-24936949,24937032-24937852,
24937946-24938407,24938486-24938890
Length = 719
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C ++ VP
Sbjct: 248 VHPTPRAQHDTNPSHHRSSCASIEVP 273
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 439 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 326
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>05_01_0608 +
5429901-5429982,5430610-5431058,5436758-5437183,
5437270-5437643,5437655-5438113,5438191-5438361,
5438442-5438760
Length = 759
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -1
Query: 452 RPASASRPNPTRPGPQSQSL 393
RPA +SRP PTRP P SL
Sbjct: 411 RPAPSSRPLPTRPHPTVVSL 430
>05_01_0511 +
4256220-4256828,4256920-4257175,4257247-4257309,
4257397-4257491
Length = 340
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -3
Query: 477 HEHRPDPAPAR-IRFPSKPDTPRSSEPILIPKLRIQFADFPYLHYS 343
H HRP P P R R P S+ P++ P QF H+S
Sbjct: 278 HVHRPTPPPHRGFRAPFTTPPSTSTPPVVPPTGFAQFGTTQAAHFS 323
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = -2
Query: 235 IRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGT 56
I+ P M S + + GFHG L+ KL PDL + HF LVF G
Sbjct: 188 IKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFNPATNQLVFPGRGA 244
Query: 55 I 53
I
Sbjct: 245 I 245
>07_03_0078 - 13147741-13148913
Length = 390
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 582 SGPAFSGLPRIFLAVSRVGFVSCAI 656
SGP + G R+F+A+S +G ++ ++
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSL 247
>12_02_0096 -
13573612-13573632,13573846-13573884,13574160-13574493,
13574660-13574830,13574913-13575730,13575812-13576114,
13576352-13577085,13577174-13577303
Length = 849
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + +VP
Sbjct: 348 VHPTPRAQHDASPSQHRSSCASTKVP 373
>07_01_0917 +
7735696-7735896,7735907-7736404,7736481-7736813,
7736991-7737314,7737367-7737836,7738165-7738447,
7738527-7738640
Length = 740
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -1
Query: 452 RPASASRPNPTRPGP 408
RPA +SRP PTRP P
Sbjct: 436 RPAPSSRPPPTRPHP 450
>06_02_0356 - 15118498-15119217,15120020-15120238,15120320-15120634
Length = 417
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -1
Query: 452 RPASASRPNPTRPGPQSQSL 393
RPAS+SR PTRP P SL
Sbjct: 224 RPASSSRSPPTRPHPTVVSL 243
>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
Length = 272
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 456 APARIRFPSKPDTPRSSEPILIPK 385
+PA + P+KP P +S PI++P+
Sbjct: 53 SPAPLPAPAKPSLPGASVPIIVPQ 76
>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
Length = 1172
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 291 PARHLHVHPSPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELER 154
P+ H +H S P+R RR+CGAL + + D + + R
Sbjct: 18 PSHHRLLHRSSLLPFPRRHHHRRRRCGALSIARASASAKDGVTVRR 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,007,780
Number of Sequences: 37544
Number of extensions: 540025
Number of successful extensions: 2259
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2257
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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