Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0284
(695 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07700.1 68418.m00883 myb family transcription factor (MYB76)... 31 0.73
At1g76965.1 68414.m08961 glycine-rich protein 31 0.96
At4g18890.1 68417.m02785 brassinosteroid signalling positive reg... 30 1.3
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 3.9
At5g42370.1 68418.m05159 expressed protein 29 3.9
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 3.9
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative... 28 5.1
At3g50750.1 68416.m05554 brassinosteroid signalling positive reg... 28 5.1
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 5.1
At4g14920.1 68417.m02292 PHD finger transcription factor, putative 28 6.8
At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein s... 28 6.8
At5g60000.1 68418.m07524 hypothetical protein 27 9.0
At5g22390.1 68418.m02612 expressed protein 27 9.0
>At5g07700.1 68418.m00883 myb family transcription factor (MYB76)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 338
Score = 31.1 bits (67), Expect = 0.73
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 506 NTNSLKRT*RTNIDQTRHRPASASRPNPTRP 414
NT+ KR ID H+P ++S PNP P
Sbjct: 109 NTHLKKRLIDDGIDPVTHKPLASSNPNPVEP 139
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 462 DPAPARIRFPSKPDTPRSSEPILIPKLRIQFAD 364
DP A + FP KP+ P P +P+L + F D
Sbjct: 92 DPGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
>At4g18890.1 68417.m02785 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 284
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = -1
Query: 449 PASASRPNPTRPGPQSQSL---FRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDI 279
P+S+S P+PT P + SL ++ SN P+ L + S+P P R +
Sbjct: 107 PSSSSFPSPTNPFGDANSLIPWLKNLSSNSPSKLPF-FHGNSISAPVTPPLARSPTRDQV 165
Query: 278 STYIPHLNFKVRREYPDTAANAVLFAFRTISPFY 177
+ IP + + P + ++ F+ + +PF+
Sbjct: 166 T--IPDSGWLSGMQTPQSGPSSPTFSLVSRNPFF 197
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 246 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 112
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 185 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 75
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 48 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 179
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
strong similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 239
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 591 RVRIQSET*DDFRECHIKYIQFLRPH 514
R+RIQ DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197
>At3g50750.1 68416.m05554 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 276
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 449 PASASRPNPTRPGP-QSQSLFRSYGSNLPTSLTYIILSTRGSSPWRP 312
P+S+S P+PTR P QS + Y NL +S L S+P P
Sbjct: 114 PSSSSYPSPTRFDPNQSSTYLIPYLQNLASSGNLAPLRISNSAPVTP 160
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 241 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 143
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At4g14920.1 68417.m02292 PHD finger transcription factor, putative
Length = 1055
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 373 LDP*LRNKDWL*GPGRVGFGREADAGRCRVWSMFVRYVRFSE 498
LD R K +L G G +GFG + RC+ + R + F E
Sbjct: 170 LDIEKRRKPYLDGSGNIGFGNQGYRNRCK--KKYKRDMNFDE 209
>At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein
similar to putative variable cytadhesin protein
(GI:7677312) {Mycoplasma gallisepticum}; contains Pfam
PF02891: MIZ zinc finger domain
Length = 842
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/93 (21%), Positives = 36/93 (38%)
Frame = -1
Query: 461 TRHRPASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRD 282
TR PAS + P P P Q + + +N TS+ S S + D
Sbjct: 467 TRDSPASQALPMTFSPTPSPQDILATNAANFGTSMPAAQSSQFQGSHVTSLGNCEGRTSD 526
Query: 281 ISTYIPHLNFKVRREYPDTAANAVLFAFRTISP 183
+ H+ +V+ ++P + ++ + SP
Sbjct: 527 LMARWNHIYGRVQTQFPPAPLSHHHYSMQNQSP 559
>At5g60000.1 68418.m07524 hypothetical protein
Length = 149
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = -1
Query: 335 RGSSPWRPAADMGTNRRDISTYIPHLNFKVRREYPD-TAANAVLFAFRTISPFYRIPWNS 159
+GS PW+P +GT R+ + + + D T + F FYR WN+
Sbjct: 78 QGSRPWQPRTCIGTFYREAHFGMHETPYVLYNSDKDATESKNSCFVVVKDDGFYR--WNN 135
Query: 158 NAQAEKKTLP 129
N + K P
Sbjct: 136 NKRIWDKVFP 145
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 120 ERSGKSFLFCLSVRVPWNPIEG 185
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,794,893
Number of Sequences: 28952
Number of extensions: 392253
Number of successful extensions: 1315
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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