Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0283
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   112   5e-26
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   7.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  112 bits (269), Expect = 5e-26
 Identities = 67/171 (39%), Positives = 89/171 (52%), Gaps = 1/171 (0%)
 Frame = +1

Query: 1   GFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGN*NF*MTSYNTWNS-N*L*P*YFMKI 177
           G +V +HH+FTVG+D+DTRAYF++AT++IA+PTG   F   +  T  +           I
Sbjct: 290 GLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAI 349

Query: 178 RFCIFIHSRRINRCNFSQFFXXXXXXXXXXVVAHFHYVLSXXXXXXXXXXXXN*YPLFTG 357
            F I      +     S             VVAHFHYVLS               P   G
Sbjct: 350 GFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYYW-SPKMFG 408

Query: 358 LSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDSYIS*NII 510
           L  N  +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP++++  N +
Sbjct: 409 LMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPEAFVGWNFV 459



 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 26/48 (54%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
 Frame = +2

Query: 107 KIFR*LATIHGTQINYNP-NIL*RLGFVFLFTVGGLTGVILANSSIDI 247
           KIF  LAT+ G  I ++   +L  +GF+ LFT+GGLTGVIL+NS +DI
Sbjct: 325 KIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVLDI 372


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 351 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRL 479
           +RPF KFL  K  IF + YW +  +  T +      T  I+ L
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGLLNGTGWIYSL 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,877
Number of Sequences: 5004
Number of extensions: 31221
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)