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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0283
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  103   1e-22
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   5e-14
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   6e-04
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   6e-04
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   6e-04
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   6e-04
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   6e-04
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   6e-04
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     28   8.2  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  103 bits (247), Expect = 1e-22
 Identities = 63/157 (40%), Positives = 78/157 (49%)
 Frame = +1

Query: 40  IDIDTRAYFTSATIIIAVPTGN*NF*MTSYNTWNSN*L*P*YFMKIRFCIFIHSRRINRC 219
           +++DTRAYFT+AT+IIAVPTG   F   +     +  L       I F        +   
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60

Query: 220 NFSQFFXXXXXXXXXXVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFT 399
             +             VVAHFHYVLS              +   TG   N    KI F+ 
Sbjct: 61  ILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWI 120

Query: 400 IFIGVNITFFPQHFLGLAGIPRRYSDYPDSYIS*NII 510
           +FIGVNITFFPQHFLGLAG PRRYSD+ D Y   N++
Sbjct: 121 MFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLV 157



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 28/47 (59%), Positives = 37/47 (78%)
 Frame = +2

Query: 107 KIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGVILANSSIDI 247
           K+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGVILANSS+D+
Sbjct: 23  KVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGVILANSSLDV 69



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 621 SIE*YQNLPPAEHSYNELPIL 683
           S+E  Q  PPA H+YNELP +
Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 33/53 (62%), Positives = 38/53 (71%)
 Frame = +1

Query: 352 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDSYIS*NII 510
           TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D Y   N++
Sbjct: 19  TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLV 71



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 621 SIE*YQNLPPAEHSYNELPIL 683
           S+E  Q  PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +1

Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510
           HFLGLAG PRRYSD+ D Y   N++
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLV 25



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 621 SIE*YQNLPPAEHSYNELPIL 683
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +1

Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510
           HFLGLAG PRRYSD+ D Y   N++
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLV 25


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +1

Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510
           HFLGLAG PRRYSD+ D Y   N++
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLV 25



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 621 SIE*YQNLPPAEHSYNELPIL 683
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +1

Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510
           HFLGLAG PRRYSD+ D Y   N++
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLV 25



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 621 SIE*YQNLPPAEHSYNELPIL 683
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +1

Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510
           HFLGLAG PRRYSD+ D Y   N++
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLV 25



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 621 SIE*YQNLPPAEHSYNELPIL 683
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +1

Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510
           HFLGLAG PRRYSD+ D Y   N++
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLV 25



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 621 SIE*YQNLPPAEHSYNELPIL 683
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +3

Query: 339 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 461
           + FIY   + FL +KN  F+  YW+   YN F        W T
Sbjct: 14  VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 610 ISHHQLNDIKIYHQQNIHIMNYQF 681
           I+HHQ + I I H Q+  I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,848,529
Number of Sequences: 59808
Number of extensions: 185288
Number of successful extensions: 304
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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