BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbVm0283 (690 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 103 1e-22 SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 5e-14 SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04 SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04 SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04 SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04 SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04 SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04 SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0 SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 8.2 >SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) Length = 229 Score = 103 bits (247), Expect = 1e-22 Identities = 63/157 (40%), Positives = 78/157 (49%) Frame = +1 Query: 40 IDIDTRAYFTSATIIIAVPTGN*NF*MTSYNTWNSN*L*P*YFMKIRFCIFIHSRRINRC 219 +++DTRAYFT+AT+IIAVPTG F + + L I F + Sbjct: 1 MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60 Query: 220 NFSQFFXXXXXXXXXXVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFT 399 + VVAHFHYVLS + TG N KI F+ Sbjct: 61 ILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWI 120 Query: 400 IFIGVNITFFPQHFLGLAGIPRRYSDYPDSYIS*NII 510 +FIGVNITFFPQHFLGLAG PRRYSD+ D Y N++ Sbjct: 121 MFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLV 157 Score = 60.5 bits (140), Expect = 1e-09 Identities = 28/47 (59%), Positives = 37/47 (78%) Frame = +2 Query: 107 KIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGVILANSSIDI 247 K+F LAT++G I + +L +GFVFLFT+GGLTGVILANSS+D+ Sbjct: 23 KVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGVILANSSLDV 69 Score = 29.5 bits (63), Expect = 2.7 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 621 SIE*YQNLPPAEHSYNELPIL 683 S+E Q PPA H+YNELP + Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219 >SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 143 Score = 74.9 bits (176), Expect = 5e-14 Identities = 33/53 (62%), Positives = 38/53 (71%) Frame = +1 Query: 352 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDSYIS*NII 510 TG N KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D Y N++ Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLV 71 Score = 29.5 bits (63), Expect = 2.7 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 621 SIE*YQNLPPAEHSYNELPIL 683 S+E Q PPA H+YNELP + Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133 >SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 95 Score = 41.5 bits (93), Expect = 6e-04 Identities = 16/25 (64%), Positives = 19/25 (76%) Frame = +1 Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510 HFLGLAG PRRYSD+ D Y N++ Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLV 25 Score = 29.5 bits (63), Expect = 2.7 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 621 SIE*YQNLPPAEHSYNELPIL 683 S+E Q PPA H+YNELP + Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87 >SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 70 Score = 41.5 bits (93), Expect = 6e-04 Identities = 16/25 (64%), Positives = 19/25 (76%) Frame = +1 Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510 HFLGLAG PRRYSD+ D Y N++ Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLV 25 >SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 95 Score = 41.5 bits (93), Expect = 6e-04 Identities = 16/25 (64%), Positives = 19/25 (76%) Frame = +1 Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510 HFLGLAG PRRYSD+ D Y N++ Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLV 25 Score = 29.5 bits (63), Expect = 2.7 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 621 SIE*YQNLPPAEHSYNELPIL 683 S+E Q PPA H+YNELP + Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87 >SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 95 Score = 41.5 bits (93), Expect = 6e-04 Identities = 16/25 (64%), Positives = 19/25 (76%) Frame = +1 Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510 HFLGLAG PRRYSD+ D Y N++ Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLV 25 Score = 29.5 bits (63), Expect = 2.7 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 621 SIE*YQNLPPAEHSYNELPIL 683 S+E Q PPA H+YNELP + Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87 >SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 95 Score = 41.5 bits (93), Expect = 6e-04 Identities = 16/25 (64%), Positives = 19/25 (76%) Frame = +1 Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510 HFLGLAG PRRYSD+ D Y N++ Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLV 25 Score = 29.5 bits (63), Expect = 2.7 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 621 SIE*YQNLPPAEHSYNELPIL 683 S+E Q PPA H+YNELP + Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87 >SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 95 Score = 41.5 bits (93), Expect = 6e-04 Identities = 16/25 (64%), Positives = 19/25 (76%) Frame = +1 Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510 HFLGLAG PRRYSD+ D Y N++ Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLV 25 Score = 29.5 bits (63), Expect = 2.7 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 621 SIE*YQNLPPAEHSYNELPIL 683 S+E Q PPA H+YNELP + Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87 >SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 707 Score = 29.9 bits (64), Expect = 2.0 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%) Frame = +3 Query: 339 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 461 + FIY + FL +KN F+ YW+ YN F W T Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56 >SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) Length = 319 Score = 27.9 bits (59), Expect = 8.2 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +1 Query: 610 ISHHQLNDIKIYHQQNIHIMNYQF 681 I+HHQ + I I H Q+ I+NY + Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,848,529 Number of Sequences: 59808 Number of extensions: 185288 Number of successful extensions: 304 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 268 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 303 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1793485733 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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