Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0283
(690 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 103 1e-22
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 5e-14
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 8.2
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 103 bits (247), Expect = 1e-22
Identities = 63/157 (40%), Positives = 78/157 (49%)
Frame = +1
Query: 40 IDIDTRAYFTSATIIIAVPTGN*NF*MTSYNTWNSN*L*P*YFMKIRFCIFIHSRRINRC 219
+++DTRAYFT+AT+IIAVPTG F + + L I F +
Sbjct: 1 MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60
Query: 220 NFSQFFXXXXXXXXXXVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFT 399
+ VVAHFHYVLS + TG N KI F+
Sbjct: 61 ILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWI 120
Query: 400 IFIGVNITFFPQHFLGLAGIPRRYSDYPDSYIS*NII 510
+FIGVNITFFPQHFLGLAG PRRYSD+ D Y N++
Sbjct: 121 MFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLV 157
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/47 (59%), Positives = 37/47 (78%)
Frame = +2
Query: 107 KIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGVILANSSIDI 247
K+F LAT++G I + +L +GFVFLFT+GGLTGVILANSS+D+
Sbjct: 23 KVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGVILANSSLDV 69
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 621 SIE*YQNLPPAEHSYNELPIL 683
S+E Q PPA H+YNELP +
Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 74.9 bits (176), Expect = 5e-14
Identities = 33/53 (62%), Positives = 38/53 (71%)
Frame = +1
Query: 352 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDSYIS*NII 510
TG N KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D Y N++
Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLV 71
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 621 SIE*YQNLPPAEHSYNELPIL 683
S+E Q PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +1
Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510
HFLGLAG PRRYSD+ D Y N++
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLV 25
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 621 SIE*YQNLPPAEHSYNELPIL 683
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +1
Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510
HFLGLAG PRRYSD+ D Y N++
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLV 25
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +1
Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510
HFLGLAG PRRYSD+ D Y N++
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLV 25
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 621 SIE*YQNLPPAEHSYNELPIL 683
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +1
Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510
HFLGLAG PRRYSD+ D Y N++
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLV 25
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 621 SIE*YQNLPPAEHSYNELPIL 683
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +1
Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510
HFLGLAG PRRYSD+ D Y N++
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLV 25
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 621 SIE*YQNLPPAEHSYNELPIL 683
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +1
Query: 436 HFLGLAGIPRRYSDYPDSYIS*NII 510
HFLGLAG PRRYSD+ D Y N++
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLV 25
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 621 SIE*YQNLPPAEHSYNELPIL 683
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 339 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 461
+ FIY + FL +KN F+ YW+ YN F W T
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 610 ISHHQLNDIKIYHQQNIHIMNYQF 681
I+HHQ + I I H Q+ I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,848,529
Number of Sequences: 59808
Number of extensions: 185288
Number of successful extensions: 304
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -