Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0283
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05084.1 68415.m00532 hypothetical protein                          29   2.9  
At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR...    28   5.1  
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    28   6.7  
At5g34950.1 68418.m04124 replication protein-related weak simila...    27   8.9  

>At2g05084.1 68415.m00532 hypothetical protein
          Length = 258

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +3

Query: 384 NSIFYNIYWSKY-NIFSTTFFRFSWNTSTIFRLSRLIYFMKY 506
           N I   I W +Y N F TT F   W     FRL R     KY
Sbjct: 48  NRIDARIPWGEYMNNFKTTLFEGKWYYLQHFRLKRATTIPKY 89


>At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1183

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 339  ISFIYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRLSRL 488
            IS + R F+   Y++ + F  +  +KY+I ST   R SW      +L ++
Sbjct: 1021 ISDLVRDFMNEEYSQEAPFRLVCITKYSIASTNNMRTSWREPMRIKLPKI 1070


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = -3

Query: 544 TDNREIYEPNEELYFMKYMSLDNLNIVEVFQLNLKNVVEKMLYL 413
           T++ ++ +  EE+  +K+ + D L  VE  Q+N  + VE+++YL
Sbjct: 308 TESDKVAKVREEVNNLKHNNEDLLKQVEGLQMNRFSEVEELVYL 351


>At5g34950.1 68418.m04124 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 234

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
 Frame = +3

Query: 384 NSIFYNIYWSKY-NIFSTTFFRFSWNTSTIFRLSRLIYFMKY 506
           N I   I W +Y N F T  F   W     FRL R     KY
Sbjct: 48  NKIDARIPWGEYMNNFKTNLFEGKWYYLQHFRLKRATTIPKY 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,341,704
Number of Sequences: 28952
Number of extensions: 137118
Number of successful extensions: 254
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)