Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0281
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          29   0.85 
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    28   1.1  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   4.5  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   6.0  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.9  

>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 429 VEKTPVVIKTIEEYAPGLVDNVQSYAS 509
           +E+ P+  KTI E  P ++++VQS A+
Sbjct: 273 IEECPIATKTINEEYPKIIEDVQSRAN 299


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 32/126 (25%), Positives = 55/126 (43%)
 Frame = -3

Query: 414 HFHTEYQLSLML*RMRP*TVVYMDDIFQQFVRSKPVHWFQAIGNREQRWTVSSASLLTML 235
           H   EYQL L+L +      V M+     F   KP+       ++ Q+ TV + + L +L
Sbjct: 338 HVVDEYQL-LLLGKQ-----VAMEVKHLMFPNDKPLEMEFPSSSQPQQ-TVPTNNSLFLL 390

Query: 234 KNAQIFEQLSRCTLREVSSSPRHVISYQTSNADQQNKAGPQPGISSSARHSV*NILELVF 55
           KN   F  L  C L   S S    + +    A +  +A      S++   +V N ++ +F
Sbjct: 391 KNIPSFGGLHHCILGRYSISLDDFVLWLLDRAQRLQQAVRISHPSTTFCSNVENDIKEIF 450

Query: 54  SICGNF 37
            +C ++
Sbjct: 451 EVCKDY 456


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
 Frame = +1

Query: 7    FFDPFKFPXTEIATYRKY*FKDILDRMTSTRRNPWLWASFVLLVSIAGLVAYDVSRAGGN 186
            F    K   T  + +    +KD + R+  T +N  L+A  V  +  AG ++ D+      
Sbjct: 1085 FLKQIKQALTVSSLFNAVGYKDGVMRLLETDQNSLLFAGVVNFLIFAG-ISLDLKTQISE 1143

Query: 187  FPKSTTGKLFKDL-GILEHSQQACRRHCPPLLAVTYGLKPMHRFTTHKLLKYVVHI 351
            F         K + G +  + +    +  PL AV Y        T HK+  ++VH+
Sbjct: 1144 FLSQLCSYFTKIVDGTVIENDKTLDFYEKPLQAVLYWFA-----TLHKIRSFLVHL 1194


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 695  CEPVAGTIHNMMKTWDF 645
            CEPV G  HN  KT+ F
Sbjct: 1063 CEPVIGLGHNYQKTYAF 1079


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 646 LSYSEPMRFILKYLWGPITNKNFSNQIVSCDLI 548
           + YS+ M F+L YL+ P T+   S+  VS DL+
Sbjct: 287 IGYSKTMHFLLTYLFEPPTSFPLSD--VSKDLL 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,124,987
Number of Sequences: 5004
Number of extensions: 67192
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)