Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0281
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0749 + 24890944-24891146,24891414-24891535,24891633-248917...    30   1.5  
12_01_0531 + 4194403-4194417,4194776-4194850,4195136-4195237,419...    29   2.7  
04_03_1029 - 21835441-21835856,21836666-21836852                       28   6.2  
09_04_0368 + 17005231-17005437,17005707-17005963,17006061-170061...    28   8.3  
06_01_0681 + 4987669-4988418                                           28   8.3  

>01_05_0749 +
           24890944-24891146,24891414-24891535,24891633-24891721,
           24891813-24891848,24892268-24892367,24892524-24892566,
           24892645-24892739,24892978-24893036,24893114-24893613,
           24893691-24893772,24893864-24894429,24894520-24894655,
           24894750-24894812,24894942-24895172,24895282-24895395
          Length = 812

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/91 (26%), Positives = 39/91 (42%)
 Frame = +1

Query: 88  TSTRRNPWLWASFVLLVSIAGLVAYDVSRAGGNFPKSTTGKLFKDLGILEHSQQACRRHC 267
           T TR      A+F  + S+ G  A+++ R       + TG L ++ GIL+     C  H 
Sbjct: 149 TQTRERSMTEAAFDRVSSLVG--AFNLFRKKEE--PTGTGPLSRETGILDLRTSTCCPHN 204

Query: 268 PPLLAVTYGLKPMHRFTTHKLLKYVVHIHNC 360
            P + V   L P  +    +  KY+  +  C
Sbjct: 205 TPSVRVQLSLVPPEKDHDPESSKYLASVKPC 235


>12_01_0531 +
           4194403-4194417,4194776-4194850,4195136-4195237,
           4195453-4195584,4196137-4196193,4196314-4196565,
           4196664-4196845,4197244-4197544
          Length = 371

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 228 HS*A*STGLQKTLS-TSARGYLWLETNAPVYYAQTVEI 338
           HS +  TGL+K +S  S  G +++E   P Y  QTV I
Sbjct: 54  HSRSYITGLEKAMSRASDEGLIFIEGTGPTYATQTVMI 91


>04_03_1029 - 21835441-21835856,21836666-21836852
          Length = 200

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 282 REQRWTVSSASLLTMLKNAQIFEQLSRCTLREVSSSPRHV 163
           R + W V + +L+  L NA++ EQ  R   RE     RHV
Sbjct: 130 RLRPWPVDAHNLVIHLDNARVAEQHPREKKREEKKETRHV 169


>09_04_0368 +
           17005231-17005437,17005707-17005963,17006061-17006115,
           17006196-17006276,17006357-17006453,17006560-17006627,
           17006788-17006886,17007008-17007049,17007124-17007263,
           17007882-17008018,17008275-17008444
          Length = 450

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 500 ALNVVYKTRSILFNGFNNDRRFL 432
           AL+  Y   S+LFNG  +DRR++
Sbjct: 103 ALSAPYACSSVLFNGNGSDRRYI 125


>06_01_0681 + 4987669-4988418
          Length = 249

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 485 RQRSELCITAWSGLKKYSSDY-YQITT 562
           R+  +L +T+W G+K++S  Y Y  TT
Sbjct: 216 REIEKLTLTSWKGIKEFSQHYLYNATT 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,979,946
Number of Sequences: 37544
Number of extensions: 426687
Number of successful extensions: 967
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)