Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0281
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15570| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_3507| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22)                 29   4.8  
SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_46666| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_46011| Best HMM Match : DNA_ligase_ZBD (HMM E-Value=2.9)            28   8.4  
SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_15570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 26  SRVLKLPHIENTNSRIF*TE*RALEEI-PGCGPALFCWSALLVW*LMTCLGLEET 187
           S +++  H+ NTN   F     A+ EI P   P    WS LLVW L   L ++ET
Sbjct: 68  SFLIENAHLLNTNGLCF-----AMTEIYPLEAPKFVYWSILLVWYLTLMLKVQET 117


>SB_3507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +1

Query: 121 SFVLLVSIAGLVAYDVSRAGGNFPKSTTGKLFKDLGILEHSQQACRRHCPPLLAVTYGLK 300
           +FV  + +A    Y   +A    P+ST  ++FKDLG + H      +     +   Y LK
Sbjct: 39  TFVEALRLAYEDCYGSVKAAEVVPESTLNEIFKDLGNIYHLDVKFLQELEERMKTWYTLK 98

Query: 301 PMHRFTTHK 327
            ++    H+
Sbjct: 99  RLYANYYHR 107


>SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22)
          Length = 231

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = +3

Query: 333 EICRP--YTQLSKDAF--FIALKKAGILYGNVQDYVVEKTPVVIKTI 461
           E+CR   YT  +++A    +A+ +A  + G+VQD VV   P+++  I
Sbjct: 175 EMCRTDYYTVFAREAVAAVVAVHRAATVTGDVQDGVVIAKPIIVSGI 221


>SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 927

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -3

Query: 309 VHWFQAIGNREQRWTVSSASLLTMLKNAQIFEQLSRCTLREVSSSPRHVI 160
           +H F+     +  +  +  +L  +LK A+IF++     LR ++ SP H +
Sbjct: 214 IHHFEKAVQLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNHAV 263


>SB_46666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 285 NREQRWTVSSASLLTMLKNAQIFEQLSRCTLREVS 181
           N+  R ++S A + TML + Q    L+RC +R+++
Sbjct: 52  NKFFRMSISDAQIDTMLLSKQTNSPLNRCVIRKIT 86


>SB_46011| Best HMM Match : DNA_ligase_ZBD (HMM E-Value=2.9)
          Length = 373

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 247 QACRRHCPPLLAVTYGLKPMHRFTTHKLL 333
           Q  RR+CP LL  T G+   H  + H +L
Sbjct: 180 QNTRRYCPTLLMKTPGITAQHCLSKHPVL 208


>SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +3

Query: 279 RGYLWLETNAPVYYAQTVEICRPYTQLSKDAFFIALKKAGILYGNVQDYVVEKTPVVIKT 458
           +G  W++ N P YY++  E   P  Q + D   +A +         + Y+ +K P   + 
Sbjct: 246 KGNSWVQENYPTYYSKFREYADPAGQYAMDKLTLAGQFIEEQSRPARAYLNKKVP---EL 302

Query: 459 IEEYAPGLVDNVQS 500
           +E     L++ +QS
Sbjct: 303 LERTIGQLINEIQS 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,258,732
Number of Sequences: 59808
Number of extensions: 504471
Number of successful extensions: 1111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)