Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0281
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22260.1 68418.m02593 male sterility 1 protein, putative (MS1...    29   3.0  
At4g31290.1 68417.m04440 ChaC-like family protein contains Pfam ...    28   6.9  
At3g27670.1 68416.m03455 expressed protein                             27   9.1  
At1g28500.1 68414.m03504 hypothetical protein contains Pfam prof...    27   9.1  

>At5g22260.1 68418.m02593 male sterility 1 protein, putative (MS1)
           identical to male sterility 1 protein [Arabidopsis
           thaliana] gi|15554513|emb|CAC69663 PMID:11696184;
           contains Pfam profile PF00628: PHD-finger; identical to
           cDNA male sterility 1 protein (ms1 gene) GI:15554514
          Length = 672

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +1

Query: 223 LGILEHSQQACRRHCPPLLAVTYGLKPMHRFTTHKLLKYVVHIHNCL-RTHSS*H*RKLV 399
           L +L H   +  R  P LL+    L      T   L ++++H+H+ L R +   + R  +
Sbjct: 258 LCLLNHHLTSLNRETPILLSKYQSLSTEPLITLSDLFRFMLHLHSRLPRDNYMSNSRNQI 317

Query: 400 FCMEMSKTMWWRKR 441
             ++ +   W +KR
Sbjct: 318 ISIDSTNCRWSQKR 331


>At4g31290.1 68417.m04440 ChaC-like family protein contains Pfam
           profile: PF04752 ChaC-like protein
          Length = 227

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 360 SKDAFFIALKKAGILYGNVQDYVVEKTPVVIKTIEEYAPGLVDNV-QSYASRPGADSKST 536
           ++D  F+ L+KA    G+ +DYV+E    V K + E +   V  V +S ASR    SK+ 
Sbjct: 150 NRDYLFL-LEKAMHDIGHEEDYVIELANEVRKVLAESSTKKVTPVKESRASRVANKSKNN 208

Query: 537 LVT 545
           + T
Sbjct: 209 VPT 211


>At3g27670.1 68416.m03455 expressed protein
          Length = 1841

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 473  SWSCRQRSELCITAWSGLKKYSSDYYQITTDYLVTKV 583
            ++SC Q+S L ++ W GL +   +    +++Y VTK+
Sbjct: 1548 TYSCDQKSSLRVSCWKGLSQCLEETSLESSEY-VTKI 1583


>At1g28500.1 68414.m03504 hypothetical protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 326

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 226 GILEHSQQACRRHCPPLLAVTYGLKPMHRF 315
           G+  +  Q+ RR+  PLL   Y L  +HRF
Sbjct: 44  GLFHYDCQSGRRYPDPLLVKRYALLGLHRF 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,269,629
Number of Sequences: 28952
Number of extensions: 352343
Number of successful extensions: 803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)