Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0278
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583...    29   3.5  
02_04_0421 - 22756903-22757384,22757585-22758047                       29   4.7  
03_05_0437 - 24293236-24294120                                         28   8.1  

>03_05_0712 -
           27057858-27057941,27058093-27058182,27058268-27058384,
           27059759-27059866,27060314-27060406,27060499-27060669,
           27061505-27061757,27061860-27062138,27062939-27063273,
           27063364-27064332,27064711-27065182,27065243-27065291,
           27066564-27066804,27067606-27067695,27068172-27068294,
           27068365-27068418
          Length = 1175

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 138 HILTLCSTLFPYVPFLPILEVLSFVP 61
           H+L + S L P +  LPIL +LSF P
Sbjct: 506 HMLRIFSLLSPSIGSLPILNMLSFTP 531


>02_04_0421 - 22756903-22757384,22757585-22758047
          Length = 314

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = +3

Query: 483 IAYRHSHPLYGN--IISYHP 536
           + YRH+HPLY N  I+  HP
Sbjct: 256 VNYRHNHPLYNNNPIVQKHP 275


>03_05_0437 - 24293236-24294120
          Length = 294

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 601 CGVHV-KEIDIDKSISVTSQLCRGW 530
           C VHV + +D+D+  S    +CRGW
Sbjct: 21  CLVHVFRRLDLDELASAAPLVCRGW 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,914,407
Number of Sequences: 37544
Number of extensions: 299656
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)