Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0278
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32822| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)           29   4.8  
SB_12655| Best HMM Match : Astacin (HMM E-Value=0)                     29   4.8  
SB_8157| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)               28   8.3  

>SB_32822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 172 LHNTCVYIRSVLFTLNEPVDFESIANERHCHITVDY*FILENFLVIVNF 318
           +H T  +I SVL  +N  +  E++   R     V   F++ NFL+ V F
Sbjct: 2   VHQTIAFIASVLGIVNCFLGVEALTETRRSGFVVMIIFVVVNFLLTVAF 50


>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
          Length = 2040

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 153  TDAVTHILTLCSTLFPYV-PFLPILEVLSFVPITD 52
            +DA+T IL LC TLF      +P L VL +  + D
Sbjct: 1204 SDALTQILILCGTLFAIANGLIPTLAVLIYSNLAD 1238


>SB_12655| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 482

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 169 FLHNTCVYIRSVLFTLNEPVDFESI 243
           F +N  VY  SVL TLN P D+ S+
Sbjct: 384 FFNNFNVYSHSVLDTLNAPYDYHSL 408


>SB_8157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 132 RYELLHLCTEECIFTQHLCLHTKCFVYTERASGLRVNCKRTALS 263
           R EL+  C ++C++ Q+ CL  K F + +  S    N   T+++
Sbjct: 128 REELVCYCDQQCLYFQYYCLDFKDFRFKKDFSTNESNYLNTSIN 171


>SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)
          Length = 603

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 537 RQSWDVTEIDLSISISFT*TPH*TVYRYK 623
           R  +D TE+ L +  S+T TP  T+Y ++
Sbjct: 21  RYVYDTTEVKLDLKNSYTVTPKETIYTFR 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,486,714
Number of Sequences: 59808
Number of extensions: 391757
Number of successful extensions: 947
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)