Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0278
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25750.1 68417.m03707 ABC transporter family protein Bactroce...    30   1.7  
At5g63220.1 68418.m07936 expressed protein contains Pfam PF04190...    27   9.0  
At5g40320.1 68418.m04892 DC1 domain-containing protein contains ...    27   9.0  

>At4g25750.1 68417.m03707 ABC transporter family protein Bactrocera
           tryoni membrane transporter (white) gene, PID:g3676298
          Length = 577

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 90  VRMERMERVWNRALRYELLHLCTEECIFTQHLCLHTKCFVYTERAS 227
           +  E + + W     + +     +  +  ++ CLH KC V+ E AS
Sbjct: 479 ISKESLPKYWLFMYFFSMYKYALDALLINEYSCLHNKCLVWFEEAS 524


>At5g63220.1 68418.m07936 expressed protein contains Pfam PF04190:
           Protein of unknown function (DUF410)
          Length = 324

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -2

Query: 228 HWLVQCKQNTSYVNTSVV*KCIPPCTDAVTHILTLCSTLFPYVPFLPIL 82
           H LV C  + + +    + K   PC D     +     LFP VP  P L
Sbjct: 66  HGLVNCGADLAILFVDTLVKAKSPCNDETLDRIRCIFKLFPRVPVPPHL 114


>At5g40320.1 68418.m04892 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 594

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 115 CGTER*DMSYCICARRNAFLHNTCVYIRSVL 207
           CG E  D S  ICA+ +  +H  C+Y+  V+
Sbjct: 184 CGLES-DRSPYICAQCDFMIHEDCIYLPRVI 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,471,291
Number of Sequences: 28952
Number of extensions: 261808
Number of successful extensions: 510
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)