Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0276
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    33   0.052
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    31   0.12 
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    27   2.6  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   6.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   7.9  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +2

Query: 83  PQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAWSSLP 262
           P + TP + + +T +SS P+T+ P+   N +T T    +S    +    TT  T  +S+P
Sbjct: 503 PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVP 562



 Score = 28.7 bits (61), Expect = 0.85
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +2

Query: 47  CVFSWRLCMPTKPQSPTPNSKTIFTTASSLP-----ITTIPLKRANRSTRTRRAKSSQMS 211
           C  S  +   + P + TP + T  TT++S+P     +T+ PL   N +T T    +S   
Sbjct: 427 CTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPV 486

Query: 212 *TNSYETTR*TAWSSLP 262
            +    TT  T  +S+P
Sbjct: 487 TSTPLTTTNCTTSTSVP 503



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
 Frame = +2

Query: 74  PTKP--QSPTPNSKTIFTTASSLP-----ITTIPLKRANRSTRTRRAKSSQMS*TNSYET 232
           PT P   S TP + T  TT++S+P     +T+ PL   N +T T    +S    +    T
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTT 470

Query: 233 TR*TAWSSLP 262
           T  T  +S+P
Sbjct: 471 TNCTTSTSIP 480


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +2

Query: 71  MPTKPQSPTPNSK---TIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR* 241
           +P+   S TP S    T  T+ASS P+T++       ST T  A S+ +S  +S  +T  
Sbjct: 282 LPSSTPSSTPLSSANSTTATSASSTPLTSV------NSTTTTSASSTPLSSVSSANSTTA 335

Query: 242 TAWSSLP 262
           T+ SS P
Sbjct: 336 TSTSSTP 342



 Score = 29.9 bits (64), Expect = 0.37
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = +2

Query: 71  MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETT 235
           +PT   S TP S    TTA+S   T  PL   N +T T  A S+ +S  NS   T
Sbjct: 415 LPTSSVSSTPLSSANSTTATSASST--PLSSVNSTTAT-SASSTPLSSVNSTTAT 466



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 71  MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRT 184
           +PT   S TP S    TTA+S   T  PL   N +T T
Sbjct: 529 LPTSSVSSTPLSSANSTTATSASST--PLTSVNSTTAT 564


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 416 LRRWQGQDESKSQLEVRSSVGEQQGLLQDCETQRNQYLTLAVQTTPNHNHMAYGANS 586
           L+R++G D   +Q+ +RS    +        T     +  +    PN N  +YGANS
Sbjct: 205 LKRFRG-DAGMTQMPLRSDTSIESITASQQPTWDENVVITSSPFNPNRNAYSYGANS 260


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +1

Query: 64  SLYANETSVSDSKLEDDLY-----NSILVADYDHSVEKSKQIYEDKKSEVITNV 210
           +L  N    S  K++D L+     N  L    +HS  K K+ YE   S ++TN+
Sbjct: 738 NLMENVEEESIDKIKDILFDIHVDNLYLFPQLEHSFYKRKKNYEKALSVLVTNI 791


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 103  LEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNN 234
            LE+D  +  ++   + ++  SK I  D+  E+I +  NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,356
Number of Sequences: 5004
Number of extensions: 49349
Number of successful extensions: 188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)